RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 DOT1LQ8TEK3 1739 aa32.79■■■□□ 2.84
LDB1-202ENST00000425280 SURF6O75683 361 aaKnown RBP32.79■■■□□ 2.84
LDB1-202ENST00000425280 KAZALD1Q96I82 304 aa32.79■■■□□ 2.84
LDB1-202ENST00000425280 TBC1D32Q96NH3 1257 aa32.79■■■□□ 2.84
LDB1-202ENST00000425280 RAB11FIP3O75154 756 aa32.78■■■□□ 2.84
LDB1-202ENST00000425280 AFDNP55196 1824 aaKnown RBP32.78■■■□□ 2.84
LDB1-202ENST00000425280 TTLL7Q6ZT98 887 aa32.78■■■□□ 2.84
LDB1-202ENST00000425280 UNC5CLQ8IV45 518 aa32.78■■■□□ 2.84
LDB1-202ENST00000425280 TEX13AQ9BXU3 409 aaPredicted RBP32.78■■■□□ 2.84
LDB1-202ENST00000425280 MFAP1P55081 439 aaKnown RBP32.77■■■□□ 2.84
LDB1-202ENST00000425280 DNAJC10Q8IXB1 793 aa32.77■■■□□ 2.84
LDB1-202ENST00000425280 OSBPL3Q9H4L5 887 aa32.77■■■□□ 2.84
LDB1-202ENST00000425280 SALL3Q9BXA9 1300 aa32.77■■■□□ 2.84
LDB1-202ENST00000425280 NUP188Q5SRE5 1749 aa32.77■■■□□ 2.84
LDB1-202ENST00000425280 KAT6BQ8WYB5 2073 aa32.76■■■□□ 2.84
LDB1-202ENST00000425280 RBM42Q9BTD8 480 aaKnown RBP32.76■■■□□ 2.84
LDB1-202ENST00000425280 PRIM1P49642 420 aaKnown RBP32.76■■■□□ 2.83
LDB1-202ENST00000425280 SYTL4Q96C24 671 aaPredicted RBP32.76■■■□□ 2.83
LDB1-202ENST00000425280 PDE1AP54750 535 aa32.75■■■□□ 2.83
LDB1-202ENST00000425280 C8orf37Q96NL8 207 aa32.75■■■□□ 2.83
LDB1-202ENST00000425280 BICC1Q9H694 974 aaKnown RBP32.74■■■□□ 2.83
LDB1-202ENST00000425280 TBC1D9Q6ZT07 1266 aa32.74■■■□□ 2.83
LDB1-202ENST00000425280 MARCH10Q8NA82 808 aaPredicted RBP32.74■■■□□ 2.83
LDB1-202ENST00000425280 CERKQ8TCT0 537 aa32.74■■■□□ 2.83
LDB1-202ENST00000425280 ATP5J2-PTCD1G3V325 749 aa32.73■■■□□ 2.83
LDB1-202ENST00000425280 NGLY1Q96IV0 654 aa32.73■■■□□ 2.83
LDB1-202ENST00000425280 BCL9LQ86UU0 1499 aa32.73■■■□□ 2.83
LDB1-202ENST00000425280 CDC45O75419 566 aa32.73■■■□□ 2.83
LDB1-202ENST00000425280 ERICH6Q7L0X2 663 aa32.72■■■□□ 2.83
LDB1-202ENST00000425280 RHPN1Q8TCX5 695 aa32.72■■■□□ 2.83
LDB1-202ENST00000425280 HSP90AB4PQ58FF6 505 aa32.71■■■□□ 2.83
LDB1-202ENST00000425280 SLC4A9Q96Q91 983 aa32.71■■■□□ 2.83
LDB1-202ENST00000425280 STARD3NLO95772 234 aa32.7■■■□□ 2.83
LDB1-202ENST00000425280 KIF1BPQ96EK5 621 aa32.7■■■□□ 2.83
LDB1-202ENST00000425280 IL1RAPL2Q9NP60 686 aa32.7■■■□□ 2.83
LDB1-202ENST00000425280 AEBP2Q6ZN18 517 aaPredicted RBP32.7■■■□□ 2.82
LDB1-202ENST00000425280 SDSP20132 328 aa32.69■■■□□ 2.82
LDB1-202ENST00000425280 MX1P20591 662 aa32.69■■■□□ 2.82
LDB1-202ENST00000425280 VPS72Q15906 364 aa32.69■■■□□ 2.82
LDB1-202ENST00000425280 C22orf23Q9BZE7 217 aa32.69■■■□□ 2.82
LDB1-202ENST00000425280 SPATA31A6Q5VVP1 1343 aa32.68■■■□□ 2.82
LDB1-202ENST00000425280 ZBTB3Q9H5J0 574 aa32.68■■■□□ 2.82
LDB1-202ENST00000425280 STAP2Q9UGK3 403 aa32.68■■■□□ 2.82
LDB1-202ENST00000425280 EPHA10Q5JZY3 1008 aa32.67■■■□□ 2.82
LDB1-202ENST00000425280 TNKS1BP1Q9C0C2 1729 aaKnown RBP32.67■■■□□ 2.82
LDB1-202ENST00000425280 COL15A1P39059 1388 aa32.66■■■□□ 2.82
LDB1-202ENST00000425280 FNBP4Q8N3X1 1017 aaPredicted RBP32.66■■■□□ 2.82
LDB1-202ENST00000425280 JARID2Q92833 1246 aaPredicted RBP32.66■■■□□ 2.82
LDB1-202ENST00000425280 A0A087WZG4 1122 aa32.66■■■□□ 2.82
LDB1-202ENST00000425280 TSHZ3Q63HK5 1081 aa32.66■■■□□ 2.82
LDB1-202ENST00000425280 UBE3BQ7Z3V4 1068 aa32.66■■■□□ 2.82
LDB1-202ENST00000425280 PA2G4Q9UQ80 394 aaKnown RBP32.66■■■□□ 2.82
LDB1-202ENST00000425280 CYP19A1P11511 503 aaPredicted RBP32.65■■■□□ 2.82
LDB1-202ENST00000425280 CASP7P55210 303 aa32.65■■■□□ 2.82
LDB1-202ENST00000425280 FAM98CQ17RN3 349 aaKnown RBP32.65■■■□□ 2.82
LDB1-202ENST00000425280 ACSBG1Q96GR2 724 aa32.65■■■□□ 2.82
LDB1-202ENST00000425280 TJP1Q07157 1748 aa32.64■■■□□ 2.82
LDB1-202ENST00000425280 OS9Q13438 667 aaPredicted RBP32.64■■■□□ 2.82
LDB1-202ENST00000425280 TUBGCP6Q96RT7 1819 aa32.64■■■□□ 2.82
LDB1-202ENST00000425280 ZNF330Q9Y3S2 320 aaPredicted RBP32.63■■■□□ 2.81
LDB1-202ENST00000425280 CWC25Q9NXE8 425 aaPredicted RBP32.62■■■□□ 2.81
LDB1-202ENST00000425280 NUTM1Q86Y26 1132 aa32.62■■■□□ 2.81
LDB1-202ENST00000425280 AOX1Q06278 1338 aa32.61■■■□□ 2.81
LDB1-202ENST00000425280 H7C1W4 665 aa32.61■■■□□ 2.81
LDB1-202ENST00000425280 A0A0G2JS52 829 aa32.6■■■□□ 2.81
LDB1-202ENST00000425280 RABL6Q3YEC7 729 aaPredicted RBP32.6■■■□□ 2.81
LDB1-202ENST00000425280 ERC1Q8IUD2 1116 aa32.6■■■□□ 2.81
LDB1-202ENST00000425280 SLC4A3P48751 1232 aa32.59■■■□□ 2.81
LDB1-202ENST00000425280 CCDC191Q8NCU4 936 aa32.59■■■□□ 2.81
LDB1-202ENST00000425280 KIF6Q6ZMV9 814 aa32.58■■■□□ 2.81
LDB1-202ENST00000425280 RBM25P49756 843 aaKnown RBP32.58■■■□□ 2.81
LDB1-202ENST00000425280 ISCA1Q9BUE6 129 aa32.57■■■□□ 2.8
LDB1-202ENST00000425280 USP21Q9UK80 565 aa32.57■■■□□ 2.8
LDB1-202ENST00000425280 TCIRG1Q13488 830 aa32.57■■■□□ 2.8
LDB1-202ENST00000425280 DAXXQ9UER7 740 aaPredicted RBP32.57■■■□□ 2.8
LDB1-202ENST00000425280 ZBTB1Q9Y2K1 713 aa32.56■■■□□ 2.8
LDB1-202ENST00000425280 G3BP1Q13283 466 aaKnown RBP eCLIP32.55■■■□□ 2.8
LDB1-202ENST00000425280 HSPA1LP34931 641 aa32.55■■■□□ 2.8
LDB1-202ENST00000425280 EIF5BO60841 1220 aaKnown RBP32.54■■■□□ 2.8
LDB1-202ENST00000425280 RFX5P48382 616 aaPredicted RBP32.54■■■□□ 2.8
LDB1-202ENST00000425280 CLASRPQ8N2M8 674 aaKnown RBP32.54■■■□□ 2.8
LDB1-202ENST00000425280 MAP3K15Q6ZN16 1313 aa32.54■■■□□ 2.8
LDB1-202ENST00000425280 SASH1O94885 1247 aa32.54■■■□□ 2.8
LDB1-202ENST00000425280 CASC1Q6TDU7 716 aa32.54■■■□□ 2.8
LDB1-202ENST00000425280 KLHDC4Q8TBB5 520 aa32.54■■■□□ 2.8
LDB1-202ENST00000425280 FOXO4P98177 505 aa32.53■■■□□ 2.8
LDB1-202ENST00000425280 PI4K2BQ8TCG2 481 aa32.52■■■□□ 2.8
LDB1-202ENST00000425280 COPRSQ9NQ92 184 aa32.52■■■□□ 2.8
LDB1-202ENST00000425280 USP42Q9H9J4 1324 aaKnown RBP32.52■■■□□ 2.8
LDB1-202ENST00000425280 TRIM28Q13263 835 aaKnown RBP32.52■■■□□ 2.8
LDB1-202ENST00000425280 SIL1Q9H173 461 aa32.52■■■□□ 2.8
LDB1-202ENST00000425280 KCNQ2O43526 872 aa32.5■■■□□ 2.79
LDB1-202ENST00000425280 RTL5Q5HYW3 569 aaPredicted RBP32.5■■■□□ 2.79
LDB1-202ENST00000425280 ARXQ96QS3 562 aa32.5■■■□□ 2.79
LDB1-202ENST00000425280 LMBR1LQ6UX01 489 aa32.5■■■□□ 2.79
LDB1-202ENST00000425280 LOC102724428A0A0B4J2F2 783 aa32.49■■■□□ 2.79
LDB1-202ENST00000425280 IL6STP40189 918 aaPredicted RBP32.49■■■□□ 2.79
LDB1-202ENST00000425280 SIK1P57059 783 aa32.49■■■□□ 2.79
LDB1-202ENST00000425280 PTPN12Q05209 780 aaKnown RBP32.49■■■□□ 2.79
LDB1-202ENST00000425280 BECN1Q14457 450 aa32.49■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms