RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 R3HCC1Q9Y3T6 440 aaKnown RBP14.08□□□□□ -0.16
PTPRF-205ENST00000414879 RHPN1Q8TCX5 695 aa14.08□□□□□ -0.16
PTPRF-205ENST00000414879 XAGE3Q8WTP9 111 aa14.08□□□□□ -0.16
PTPRF-205ENST00000414879 SPHKAPQ2M3C7 1700 aa14.08□□□□□ -0.16
PTPRF-205ENST00000414879 AATKQ6ZMQ8 1374 aa14.07□□□□□ -0.16
PTPRF-205ENST00000414879 TTC41PQ6P2S7 1318 aa14.07□□□□□ -0.16
PTPRF-205ENST00000414879 USP5P45974 858 aa14.07□□□□□ -0.16
PTPRF-205ENST00000414879 TTC22Q5TAA0 569 aa14.07□□□□□ -0.16
PTPRF-205ENST00000414879 DDX21Q9NR30 783 aaKnown RBP eCLIP14.07□□□□□ -0.16
PTPRF-205ENST00000414879 KIF1BO60333 1816 aa14.07□□□□□ -0.16
PTPRF-205ENST00000414879 ZNF213O14771 459 aa14.07□□□□□ -0.16
PTPRF-205ENST00000414879 CASTP20810 708 aaKnown RBP14.07□□□□□ -0.16
PTPRF-205ENST00000414879 GPS2Q13227 327 aa14.07□□□□□ -0.16
PTPRF-205ENST00000414879 MAP4K4O95819 1239 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-205ENST00000414879 ANAPC15P60006 121 aa14.07□□□□□ -0.16
PTPRF-205ENST00000414879 COPS6Q7L5N1 327 aa14.07□□□□□ -0.16
PTPRF-205ENST00000414879 BMP2KQ9NSY1 1161 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-205ENST00000414879 TXLNBQ8N3L3 684 aa14.06□□□□□ -0.16
PTPRF-205ENST00000414879 NEURL4Q96JN8 1562 aa14.06□□□□□ -0.16
PTPRF-205ENST00000414879 MAGEC2Q9UBF1 373 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-205ENST00000414879 A0A0U1RQG5 324 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-205ENST00000414879 ZSCAN29Q8IWY8 852 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-205ENST00000414879 SCAND2PQ9GZW5 306 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-205ENST00000414879 LIMCH1Q9UPQ0 1083 aa14.06□□□□□ -0.16
PTPRF-205ENST00000414879 LAMC1P11047 1609 aa14.06□□□□□ -0.16
PTPRF-205ENST00000414879 UGGT1Q9NYU2 1555 aa14.06□□□□□ -0.16
PTPRF-205ENST00000414879 PRPF40AO75400 957 aaKnown RBP14.06□□□□□ -0.16
PTPRF-205ENST00000414879 EPS15P42566 896 aa14.06□□□□□ -0.16
PTPRF-205ENST00000414879 NASPP49321 788 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-205ENST00000414879 NUP133Q8WUM0 1156 aa14.06□□□□□ -0.16
PTPRF-205ENST00000414879 SMARCE1Q969G3 411 aa14.06□□□□□ -0.16
PTPRF-205ENST00000414879 NLRP3Q96P20 1036 aa14.06□□□□□ -0.16
PTPRF-205ENST00000414879 RTN4Q9NQC3 1192 aaKnown RBP14.06□□□□□ -0.16
PTPRF-205ENST00000414879 RNF17Q9BXT8 1623 aaKnown RBP14.05□□□□□ -0.16
PTPRF-205ENST00000414879 POLR3DP05423 398 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-205ENST00000414879 TRAF1Q13077 416 aa14.05□□□□□ -0.16
PTPRF-205ENST00000414879 C8orf58Q8NAV2 365 aa14.05□□□□□ -0.16
PTPRF-205ENST00000414879 CTCFLQ8NI51 663 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-205ENST00000414879 SETDB2Q96T68 719 aa14.05□□□□□ -0.16
PTPRF-205ENST00000414879 ATP6V1AP38606 617 aa14.05□□□□□ -0.16
PTPRF-205ENST00000414879 NBPF6Q5VWK0 638 aa14.05□□□□□ -0.16
PTPRF-205ENST00000414879 NBPF5PQ86XG9 351 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-205ENST00000414879 NBPF4Q96M43 638 aa14.05□□□□□ -0.16
PTPRF-205ENST00000414879 MAP3K4Q9Y6R4 1608 aa14.05□□□□□ -0.16
PTPRF-205ENST00000414879 KIAA0232Q92628 1395 aa14.05□□□□□ -0.16
PTPRF-205ENST00000414879 ANKRD18AQ8IVF6 992 aa14.05□□□□□ -0.16
PTPRF-205ENST00000414879 MKNK2Q9HBH9 465 aa14.05□□□□□ -0.16
PTPRF-205ENST00000414879 ZMYM4Q5VZL5 1548 aa14.05□□□□□ -0.16
PTPRF-205ENST00000414879 FIBPO43427 364 aa14.04□□□□□ -0.16
PTPRF-205ENST00000414879 FOSBP53539 338 aa14.04□□□□□ -0.16
PTPRF-205ENST00000414879 ME1P48163 572 aa14.04□□□□□ -0.16
PTPRF-205ENST00000414879 PARP10Q53GL7 1025 aa14.04□□□□□ -0.16
PTPRF-205ENST00000414879 CCDC8Q9H0W5 538 aaPredicted RBP14.04□□□□□ -0.16
PTPRF-205ENST00000414879 POLR1AO95602 1720 aaPredicted RBP14.04□□□□□ -0.16
PTPRF-205ENST00000414879 PRPF40BQ6NWY9 871 aaKnown RBP14.04□□□□□ -0.16
PTPRF-205ENST00000414879 SPATA32Q96LK8 384 aa14.04□□□□□ -0.16
PTPRF-205ENST00000414879 UTP14AQ9BVJ6 771 aaKnown RBP14.04□□□□□ -0.16
PTPRF-205ENST00000414879 SYNMO15061 1565 aa14.04□□□□□ -0.16
PTPRF-205ENST00000414879 ABCC3O15438 1527 aa14.04□□□□□ -0.16
PTPRF-205ENST00000414879 NPHP4O75161 1426 aaPredicted RBP14.04□□□□□ -0.16
PTPRF-205ENST00000414879 HSPA2P54652 639 aa14.04□□□□□ -0.16
PTPRF-205ENST00000414879 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-205ENST00000414879 ZNF444Q8N0Y2 327 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-205ENST00000414879 ZRANB1Q9UGI0 708 aa14.03□□□□□ -0.16
PTPRF-205ENST00000414879 SEC63Q9UGP8 760 aaKnown RBP14.03□□□□□ -0.16
PTPRF-205ENST00000414879 E9PCH4 1651 aa14.03□□□□□ -0.16
PTPRF-205ENST00000414879 SMARCA5O60264 1052 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-205ENST00000414879 TMTC2Q8N394 836 aa14.03□□□□□ -0.16
PTPRF-205ENST00000414879 CCDC12Q8WUD4 166 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-205ENST00000414879 CCDC85AQ96PX6 553 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-205ENST00000414879 SLAIN2Q9P270 581 aa14.03□□□□□ -0.16
PTPRF-205ENST00000414879 KIDINS220Q9ULH0 1771 aa14.03□□□□□ -0.16
PTPRF-205ENST00000414879 CHL1O00533 1208 aa14.03□□□□□ -0.16
PTPRF-205ENST00000414879 GPTP24298 496 aa14.03□□□□□ -0.16
PTPRF-205ENST00000414879 ATP2B2Q01814 1243 aa14.03□□□□□ -0.16
PTPRF-205ENST00000414879 TPTE2Q6XPS3 522 aa14.03□□□□□ -0.16
PTPRF-205ENST00000414879 BLMP54132 1417 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-205ENST00000414879 CEP152O94986 1710 aa14.03□□□□□ -0.16
PTPRF-205ENST00000414879 VWDEQ8N2E2 1590 aa14.03□□□□□ -0.16
PTPRF-205ENST00000414879 CBFA2T2O43439 604 aa14.03□□□□□ -0.16
PTPRF-205ENST00000414879 PDE4BQ07343 736 aa14.03□□□□□ -0.16
PTPRF-205ENST00000414879 WWC2Q6AWC2 1192 aa14.03□□□□□ -0.16
PTPRF-205ENST00000414879 CAVIN1Q6NZI2 390 aaKnown RBP14.03□□□□□ -0.16
PTPRF-205ENST00000414879 DCTPP1Q9H773 170 aa14.03□□□□□ -0.16
PTPRF-205ENST00000414879 ZC3H13Q5T200 1668 aaKnown RBP14.02□□□□□ -0.16
PTPRF-205ENST00000414879 KRT18P05783 430 aaKnown RBP14.02□□□□□ -0.16
PTPRF-205ENST00000414879 CRACR2BQ8N4Y2 399 aaPredicted RBP14.02□□□□□ -0.16
PTPRF-205ENST00000414879 TNMDQ9H2S6 317 aa14.02□□□□□ -0.16
PTPRF-205ENST00000414879 LUC7LQ9NQ29 371 aaKnown RBP14.02□□□□□ -0.16
PTPRF-205ENST00000414879 KIF5BP33176 963 aa14.02□□□□□ -0.16
PTPRF-205ENST00000414879 PYM1Q9BRP8 204 aaKnown RBP14.02□□□□□ -0.16
PTPRF-205ENST00000414879 WDHD1O75717 1129 aaPredicted RBP14.02□□□□□ -0.17
PTPRF-205ENST00000414879 HOMER1Q86YM7 354 aa14.02□□□□□ -0.17
PTPRF-205ENST00000414879 NFATC2IPQ8NCF5 419 aa14.02□□□□□ -0.17
PTPRF-205ENST00000414879 OFD1O75665 1012 aa14.02□□□□□ -0.17
PTPRF-205ENST00000414879 LTKP29376 864 aa14.02□□□□□ -0.17
PTPRF-205ENST00000414879 STK3Q13188 491 aa14.02□□□□□ -0.17
PTPRF-205ENST00000414879 RAD50Q92878 1312 aa14.02□□□□□ -0.17
PTPRF-205ENST00000414879 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.02□□□□□ -0.17
PTPRF-205ENST00000414879 PPP1R1BQ9UD71 204 aaPredicted RBP14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms