RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 PI4K2BQ8TCG2 481 aa18.48■□□□□ 0.55
GPC3-202ENST00000394299 NEXNQ0ZGT2 675 aa18.48■□□□□ 0.55
GPC3-202ENST00000394299 SIL1Q9H173 461 aa18.48■□□□□ 0.55
GPC3-202ENST00000394299 ESYT1Q9BSJ8 1104 aa18.47■□□□□ 0.55
GPC3-202ENST00000394299 UTYO14607 1347 aa18.47■□□□□ 0.55
GPC3-202ENST00000394299 ERVV-2B6SEH9 535 aa18.46■□□□□ 0.55
GPC3-202ENST00000394299 NKX1-1Q15270 411 aaPredicted RBP18.46■□□□□ 0.55
GPC3-202ENST00000394299 TTLL7Q6ZT98 887 aa18.46■□□□□ 0.55
GPC3-202ENST00000394299 SASH1O94885 1247 aa18.45■□□□□ 0.54
GPC3-202ENST00000394299 REC8O95072 547 aa18.45■□□□□ 0.54
GPC3-202ENST00000394299 K7ELQ4 463 aaPredicted RBP18.45■□□□□ 0.54
GPC3-202ENST00000394299 CHMP5Q9NZZ3 219 aa18.45■□□□□ 0.54
GPC3-202ENST00000394299 HSP90AB4PQ58FF6 505 aa18.44■□□□□ 0.54
GPC3-202ENST00000394299 UBE3BQ7Z3V4 1068 aa18.44■□□□□ 0.54
GPC3-202ENST00000394299 ABCA3Q99758 1704 aa18.44■□□□□ 0.54
GPC3-202ENST00000394299 ANO2Q9NQ90 1003 aa18.44■□□□□ 0.54
GPC3-202ENST00000394299 DDIT3P35638 169 aa18.43■□□□□ 0.54
GPC3-202ENST00000394299 CLASRPQ8N2M8 674 aaKnown RBP18.43■□□□□ 0.54
GPC3-202ENST00000394299 PALD1Q9ULE6 856 aa18.43■□□□□ 0.54
GPC3-202ENST00000394299 RABEP1Q15276 862 aa18.42■□□□□ 0.54
GPC3-202ENST00000394299 CCDC8Q9H0W5 538 aaPredicted RBP18.42■□□□□ 0.54
GPC3-202ENST00000394299 ASAP1Q9ULH1 1129 aa18.42■□□□□ 0.54
GPC3-202ENST00000394299 PLEKHG2Q9H7P9 1386 aa18.42■□□□□ 0.54
GPC3-202ENST00000394299 A0A087WZG4 1122 aa18.42■□□□□ 0.54
GPC3-202ENST00000394299 HSP90AA1P07900 732 aaKnown RBP18.42■□□□□ 0.54
GPC3-202ENST00000394299 AACSQ86V21 672 aa18.42■□□□□ 0.54
GPC3-202ENST00000394299 EAF2Q96CJ1 260 aaPredicted RBP18.42■□□□□ 0.54
GPC3-202ENST00000394299 G3BP1Q13283 466 aaKnown RBP eCLIP18.41■□□□□ 0.54
GPC3-202ENST00000394299 PLBD2Q8NHP8 589 aa18.41■□□□□ 0.54
GPC3-202ENST00000394299 ZBTB3Q9H5J0 574 aa18.41■□□□□ 0.54
GPC3-202ENST00000394299 TLR7Q9NYK1 1049 aaKnown RBP18.41■□□□□ 0.54
GPC3-202ENST00000394299 GLI3P10071 1580 aa18.41■□□□□ 0.54
GPC3-202ENST00000394299 NHSL1Q5SYE7 1610 aa18.41■□□□□ 0.54
GPC3-202ENST00000394299 AOX1Q06278 1338 aa18.41■□□□□ 0.54
GPC3-202ENST00000394299 ZNF330Q9Y3S2 320 aaPredicted RBP18.41■□□□□ 0.54
GPC3-202ENST00000394299 PARP4Q9UKK3 1724 aaKnown RBP18.41■□□□□ 0.54
GPC3-202ENST00000394299 PIGBQ92521 554 aa18.4■□□□□ 0.54
GPC3-202ENST00000394299 HDAC5Q9UQL6 1122 aa18.4■□□□□ 0.54
GPC3-202ENST00000394299 TUBGCP6Q96RT7 1819 aa18.4■□□□□ 0.54
GPC3-202ENST00000394299 IFIT2P09913 472 aaKnown RBP18.4■□□□□ 0.54
GPC3-202ENST00000394299 TMOD3Q9NYL9 352 aa18.4■□□□□ 0.54
GPC3-202ENST00000394299 EIF5BO60841 1220 aaKnown RBP18.39■□□□□ 0.53
GPC3-202ENST00000394299 GSE1Q14687 1217 aa18.39■□□□□ 0.53
GPC3-202ENST00000394299 ADAMTS2O95450 1211 aa18.38■□□□□ 0.53
GPC3-202ENST00000394299 CWC27Q6UX04 472 aaKnown RBP18.38■□□□□ 0.53
GPC3-202ENST00000394299 ECHDC1Q9NTX5 307 aa18.38■□□□□ 0.53
GPC3-202ENST00000394299 KCPQ6ZWJ8 1503 aa18.38■□□□□ 0.53
GPC3-202ENST00000394299 SHANK3Q9BYB0 1731 aa18.37■□□□□ 0.53
GPC3-202ENST00000394299 CASP7P55210 303 aa18.37■□□□□ 0.53
GPC3-202ENST00000394299 ERC1Q8IUD2 1116 aa18.37■□□□□ 0.53
GPC3-202ENST00000394299 GLRX3O76003 335 aaKnown RBP18.37■□□□□ 0.53
GPC3-202ENST00000394299 MCM4P33991 863 aa18.37■□□□□ 0.53
GPC3-202ENST00000394299 RFX5P48382 616 aaPredicted RBP18.37■□□□□ 0.53
GPC3-202ENST00000394299 DNAJC10Q8IXB1 793 aa18.37■□□□□ 0.53
GPC3-202ENST00000394299 CNTROBQ8N137 903 aa18.37■□□□□ 0.53
GPC3-202ENST00000394299 NEK4P51957 841 aa18.36■□□□□ 0.53
GPC3-202ENST00000394299 PTPN12Q05209 780 aaKnown RBP18.36■□□□□ 0.53
GPC3-202ENST00000394299 ATG3Q9NT62 314 aa18.36■□□□□ 0.53
GPC3-202ENST00000394299 USP42Q9H9J4 1324 aaKnown RBP18.36■□□□□ 0.53
GPC3-202ENST00000394299 LMBR1LQ6UX01 489 aa18.35■□□□□ 0.53
GPC3-202ENST00000394299 TNPO1Q92973 898 aaKnown RBP18.35■□□□□ 0.53
GPC3-202ENST00000394299 ARXQ96QS3 562 aa18.35■□□□□ 0.53
GPC3-202ENST00000394299 TTC41PQ6P2S7 1318 aa18.35■□□□□ 0.53
GPC3-202ENST00000394299 SYTL4Q96C24 671 aaPredicted RBP18.35■□□□□ 0.53
GPC3-202ENST00000394299 CHMP3Q9Y3E7 222 aa18.35■□□□□ 0.53
GPC3-202ENST00000394299 KAT6BQ8WYB5 2073 aa18.35■□□□□ 0.53
GPC3-202ENST00000394299 NOL8Q76FK4 1167 aaKnown RBP18.34■□□□□ 0.53
GPC3-202ENST00000394299 BOLA2Q9H3K6 86 aa18.34■□□□□ 0.53
GPC3-202ENST00000394299 SGSM2O43147 1006 aa18.34■□□□□ 0.53
GPC3-202ENST00000394299 ROBO1Q9Y6N7 1651 aa18.34■□□□□ 0.53
GPC3-202ENST00000394299 H7C1W4 665 aa18.33■□□□□ 0.53
GPC3-202ENST00000394299 TFCP2Q12800 502 aa18.33■□□□□ 0.53
GPC3-202ENST00000394299 ZGPATQ8N5A5 531 aaKnown RBP18.33■□□□□ 0.53
GPC3-202ENST00000394299 UPF3BQ9BZI7 483 aaKnown RBP18.33■□□□□ 0.53
GPC3-202ENST00000394299 ERBB4Q15303 1308 aa18.33■□□□□ 0.52
GPC3-202ENST00000394299 ST18O60284 1047 aa18.33■□□□□ 0.52
GPC3-202ENST00000394299 FOXO4P98177 505 aa18.33■□□□□ 0.52
GPC3-202ENST00000394299 RABL6Q3YEC7 729 aaPredicted RBP18.33■□□□□ 0.52
GPC3-202ENST00000394299 TOGARAM1Q9Y4F4 1720 aa18.32■□□□□ 0.52
GPC3-202ENST00000394299 EDC3Q96F86 508 aaKnown RBP18.32■□□□□ 0.52
GPC3-202ENST00000394299 SLC4A9Q96Q91 983 aa18.32■□□□□ 0.52
GPC3-202ENST00000394299 COPRSQ9NQ92 184 aa18.32■□□□□ 0.52
GPC3-202ENST00000394299 CCDC9Q9Y3X0 531 aaKnown RBP18.32■□□□□ 0.52
GPC3-202ENST00000394299 NDUFB9Q9Y6M9 179 aa18.32■□□□□ 0.52
GPC3-202ENST00000394299 ARFGEF2Q9Y6D5 1785 aa18.32■□□□□ 0.52
GPC3-202ENST00000394299 TNS2Q63HR2 1409 aa18.32■□□□□ 0.52
GPC3-202ENST00000394299 NUTM2BA6NNL0 878 aaPredicted RBP18.32■□□□□ 0.52
GPC3-202ENST00000394299 NUTM2EB1AL46 878 aaPredicted RBP18.32■□□□□ 0.52
GPC3-202ENST00000394299 SSFA2P28290 1259 aa18.32■□□□□ 0.52
GPC3-202ENST00000394299 NUTM2AQ8IVF1 878 aaPredicted RBP18.32■□□□□ 0.52
GPC3-202ENST00000394299 CWC25Q9NXE8 425 aaPredicted RBP18.32■□□□□ 0.52
GPC3-202ENST00000394299 EXOC5O00471 708 aa18.31■□□□□ 0.52
GPC3-202ENST00000394299 PKP1Q13835 747 aa18.31■□□□□ 0.52
GPC3-202ENST00000394299 RAB3GAP1Q15042 981 aa18.31■□□□□ 0.52
GPC3-202ENST00000394299 LSG1Q9H089 658 aaKnown RBP18.31■□□□□ 0.52
GPC3-202ENST00000394299 UBR2Q8IWV8 1755 aa18.31■□□□□ 0.52
GPC3-202ENST00000394299 MCCP23508 829 aa18.3■□□□□ 0.52
GPC3-202ENST00000394299 PIP4K2BP78356 416 aa18.3■□□□□ 0.52
GPC3-202ENST00000394299 GPATCH3Q96I76 525 aa18.3■□□□□ 0.52
GPC3-202ENST00000394299 ZNF594Q96JF6 807 aaPredicted RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms