RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 ERLIN1O75477 346 aa10.03□□□□□ -0.8
SYNE1-206ENST00000367253 KIAA1328Q86T90 577 aa10.03□□□□□ -0.8
SYNE1-206ENST00000367253 MKNK2Q9HBH9 465 aa10.03□□□□□ -0.8
SYNE1-206ENST00000367253 TRMT112Q9UI30 125 aaKnown RBP10.03□□□□□ -0.8
SYNE1-206ENST00000367253 CSADQ9Y600 493 aa10.03□□□□□ -0.8
SYNE1-206ENST00000367253 SULF1Q8IWU6 871 aa10.03□□□□□ -0.8
SYNE1-206ENST00000367253 IFNL2Q8IZJ0 200 aa10.03□□□□□ -0.8
SYNE1-206ENST00000367253 LARGE2Q8N3Y3 721 aa10.03□□□□□ -0.8
SYNE1-206ENST00000367253 GBP2P32456 591 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-206ENST00000367253 CCDC112Q8NEF3 446 aa10.03□□□□□ -0.8
SYNE1-206ENST00000367253 SEC63Q9UGP8 760 aaKnown RBP10.03□□□□□ -0.8
SYNE1-206ENST00000367253 RPAINQ86UA6 219 aa10.03□□□□□ -0.8
SYNE1-206ENST00000367253 NUP133Q8WUM0 1156 aa10.03□□□□□ -0.8
SYNE1-206ENST00000367253 UIMC1Q96RL1 719 aa10.03□□□□□ -0.8
SYNE1-206ENST00000367253 TMX1Q9H3N1 280 aa10.03□□□□□ -0.8
SYNE1-206ENST00000367253 ELL2O00472 640 aaPredicted RBP10.02□□□□□ -0.8
SYNE1-206ENST00000367253 GTF2F1P35269 517 aaKnown RBP eCLIP10.02□□□□□ -0.8
SYNE1-206ENST00000367253 PPP2R5AQ15172 486 aa10.02□□□□□ -0.8
SYNE1-206ENST00000367253 KIF20AO95235 890 aa10.02□□□□□ -0.81
SYNE1-206ENST00000367253 SLC5A1P13866 664 aa10.02□□□□□ -0.81
SYNE1-206ENST00000367253 SPOUT1Q5T280 376 aaKnown RBP10.02□□□□□ -0.81
SYNE1-206ENST00000367253 ZNF444Q8N0Y2 327 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-206ENST00000367253 RBM17Q96I25 401 aaKnown RBP10.02□□□□□ -0.81
SYNE1-206ENST00000367253 SEPT7Q16181 437 aaKnown RBP10.02□□□□□ -0.81
SYNE1-206ENST00000367253 HSP90AB2PQ58FF8 381 aa10.02□□□□□ -0.81
SYNE1-206ENST00000367253 ATP6V1AP38606 617 aa10.02□□□□□ -0.81
SYNE1-206ENST00000367253 PIP4K2AP48426 406 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-206ENST00000367253 GPBP1L1Q9HC44 474 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-206ENST00000367253 SSX2IPQ9Y2D8 614 aa10.02□□□□□ -0.81
SYNE1-206ENST00000367253 DHX29Q7Z478 1369 aaKnown RBP10.01□□□□□ -0.81
SYNE1-206ENST00000367253 USP47Q96K76 1375 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 KAT6BQ8WYB5 2073 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 PALM3A6NDB9 673 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-206ENST00000367253 SEPT6Q14141 434 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 ANKRD18AQ8IVF6 992 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 GTPBP4Q9BZE4 634 aaKnown RBP10.01□□□□□ -0.81
SYNE1-206ENST00000367253 TRIM5Q9C035 493 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 HDAC1Q13547 482 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-206ENST00000367253 TNFAIP1Q13829 316 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 DHX8Q14562 1220 aaKnown RBP10.01□□□□□ -0.81
SYNE1-206ENST00000367253 CCDC96Q2M329 555 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 HDGFL1Q5TGJ6 251 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 CNTLNQ9NXG0 1405 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 MAGI3Q5TCQ9 1506 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 ATAD2Q6PL18 1390 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 TRAK2O60296 914 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 MBD3O95983 291 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 RIPK4P57078 832 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 SLC4A8Q2Y0W8 1093 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 PDZRN3Q9UPQ7 1066 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 M0QZ92 97 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 STK25O00506 426 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 SMCR8Q8TEV9 937 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-206ENST00000367253 FMNL2Q96PY5 1086 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 CCNL1Q9UK58 526 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-206ENST00000367253 WWC3Q9ULE0 1092 aa10.01□□□□□ -0.81
SYNE1-206ENST00000367253 SMAP1Q8IYB5 467 aaPredicted RBP10□□□□□ -0.81
SYNE1-206ENST00000367253 LRRCC1Q9C099 1032 aa10□□□□□ -0.81
SYNE1-206ENST00000367253 KDM2BQ8NHM5 1336 aa10□□□□□ -0.81
SYNE1-206ENST00000367253 PPP1R12BO60237 982 aaPredicted RBP10□□□□□ -0.81
SYNE1-206ENST00000367253 ERLIN2O94905 339 aa10□□□□□ -0.81
SYNE1-206ENST00000367253 SPATA32Q96LK8 384 aa10□□□□□ -0.81
SYNE1-206ENST00000367253 ABCF2Q9UG63 623 aa10□□□□□ -0.81
SYNE1-206ENST00000367253 PDILTQ8N807 584 aa10□□□□□ -0.81
SYNE1-206ENST00000367253 UBAC1Q9BSL1 405 aa10□□□□□ -0.81
SYNE1-206ENST00000367253 ZNF518AQ6AHZ1 1483 aa10□□□□□ -0.81
SYNE1-206ENST00000367253 ABCC10Q5T3U5 1492 aa9.99□□□□□ -0.81
SYNE1-206ENST00000367253 BTBD11A6QL63 1104 aa9.99□□□□□ -0.81
SYNE1-206ENST00000367253 EZRP15311 586 aaKnown RBP9.99□□□□□ -0.81
SYNE1-206ENST00000367253 ZNF804AQ7Z570 1209 aa9.99□□□□□ -0.81
SYNE1-206ENST00000367253 LBHD1Q9BQE6 289 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-206ENST00000367253 VPS37CA5D8V6 355 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-206ENST00000367253 CETN2P41208 172 aa9.99□□□□□ -0.81
SYNE1-206ENST00000367253 METTL24Q5JXM2 366 aa9.99□□□□□ -0.81
SYNE1-206ENST00000367253 HACE1Q8IYU2 909 aa9.99□□□□□ -0.81
SYNE1-206ENST00000367253 RPUSD2Q8IZ73 545 aaKnown RBP9.99□□□□□ -0.81
SYNE1-206ENST00000367253 SEPT11Q9NVA2 429 aaKnown RBP9.99□□□□□ -0.81
SYNE1-206ENST00000367253 ADGRL2O95490 1459 aa9.99□□□□□ -0.81
SYNE1-206ENST00000367253 DNMT1P26358 1616 aaKnown RBP9.99□□□□□ -0.81
SYNE1-206ENST00000367253 SYCP2Q9BX26 1530 aa9.99□□□□□ -0.81
SYNE1-206ENST00000367253 ANKRD18BA2A2Z9 1011 aa9.99□□□□□ -0.81
SYNE1-206ENST00000367253 DYTNA2CJ06 578 aa9.99□□□□□ -0.81
SYNE1-206ENST00000367253 OLFM4Q6UX06 510 aa9.99□□□□□ -0.81
SYNE1-206ENST00000367253 SMC3Q9UQE7 1217 aa9.99□□□□□ -0.81
SYNE1-206ENST00000367253 NINLQ9Y2I6 1382 aa9.99□□□□□ -0.81
SYNE1-206ENST00000367253 TTC21AQ8NDW8 1320 aa9.99□□□□□ -0.81
SYNE1-206ENST00000367253 NR1I2O75469 434 aa9.99□□□□□ -0.81
SYNE1-206ENST00000367253 ANKRD45Q5TZF3 282 aa9.99□□□□□ -0.81
SYNE1-206ENST00000367253 ZCRB1Q8TBF4 217 aaKnown RBP9.99□□□□□ -0.81
SYNE1-206ENST00000367253 DUOX2Q9NRD8 1548 aa9.98□□□□□ -0.81
SYNE1-206ENST00000367253 YEATS2Q9ULM3 1422 aa9.98□□□□□ -0.81
SYNE1-206ENST00000367253 IGSF3O75054 1194 aa9.98□□□□□ -0.81
SYNE1-206ENST00000367253 ALDH1B1P30837 517 aa9.98□□□□□ -0.81
SYNE1-206ENST00000367253 IRAK4Q9NWZ3 460 aa9.98□□□□□ -0.81
SYNE1-206ENST00000367253 CTNNA3Q9UI47 895 aa9.98□□□□□ -0.81
SYNE1-206ENST00000367253 FAM184BQ9ULE4 1060 aa9.98□□□□□ -0.81
SYNE1-206ENST00000367253 NOL7Q9UMY1 257 aaKnown RBP9.98□□□□□ -0.81
SYNE1-206ENST00000367253 RGS22Q8NE09 1264 aa9.98□□□□□ -0.81
SYNE1-206ENST00000367253 ERBINQ96RT1 1412 aa9.98□□□□□ -0.81
SYNE1-206ENST00000367253 PLCG2P16885 1265 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms