RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 SSH3Q8TE77 659 aa15.82■□□□□ 0.12
CLK3-201ENST00000345005 UTYO14607 1347 aa15.82■□□□□ 0.12
CLK3-201ENST00000345005 BMP2KLQ5H9B9 411 aa15.82■□□□□ 0.12
CLK3-201ENST00000345005 POTEAQ6S8J7 498 aa15.82■□□□□ 0.12
CLK3-201ENST00000345005 PLBD2Q8NHP8 589 aa15.82■□□□□ 0.12
CLK3-201ENST00000345005 ATG3Q9NT62 314 aa15.82■□□□□ 0.12
CLK3-201ENST00000345005 ASAP1Q9ULH1 1129 aa15.82■□□□□ 0.12
CLK3-201ENST00000345005 NBPF26B4DH59 902 aa15.81■□□□□ 0.12
CLK3-201ENST00000345005 CWF19L2Q2TBE0 894 aaKnown RBP15.81■□□□□ 0.12
CLK3-201ENST00000345005 NBPF14Q5TI25 921 aa15.81■□□□□ 0.12
CLK3-201ENST00000345005 NBPF10Q6P3W6 841 aaKnown RBP15.81■□□□□ 0.12
CLK3-201ENST00000345005 NBPF15Q8N660 670 aa15.81■□□□□ 0.12
CLK3-201ENST00000345005 BRPF3Q9ULD4 1205 aa15.81■□□□□ 0.12
CLK3-201ENST00000345005 GRM8O00222 908 aa15.8■□□□□ 0.12
CLK3-201ENST00000345005 A1BGP04217 495 aa15.8■□□□□ 0.12
CLK3-201ENST00000345005 PIP4K2AP48426 406 aaPredicted RBP15.8■□□□□ 0.12
CLK3-201ENST00000345005 POLA2Q14181 598 aa15.8■□□□□ 0.12
CLK3-201ENST00000345005 PPP1R42Q7Z4L9 355 aa15.8■□□□□ 0.12
CLK3-201ENST00000345005 C8orf37Q96NL8 207 aa15.8■□□□□ 0.12
CLK3-201ENST00000345005 NUP188Q5SRE5 1749 aa15.8■□□□□ 0.12
CLK3-201ENST00000345005 NEURL1BA8MQ27 555 aa15.8■□□□□ 0.12
CLK3-201ENST00000345005 IGKV5-2P06315 115 aa15.8■□□□□ 0.12
CLK3-201ENST00000345005 VPS72Q15906 364 aa15.8■□□□□ 0.12
CLK3-201ENST00000345005 PLEKHM2Q8IWE5 1019 aa15.8■□□□□ 0.12
CLK3-201ENST00000345005 MYD88Q99836 296 aa15.8■□□□□ 0.12
CLK3-201ENST00000345005 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.8■□□□□ 0.12
CLK3-201ENST00000345005 STARD3NLO95772 234 aa15.79■□□□□ 0.12
CLK3-201ENST00000345005 MTX1Q13505 466 aa15.79■□□□□ 0.12
CLK3-201ENST00000345005 FNBP4Q8N3X1 1017 aaPredicted RBP15.79■□□□□ 0.12
CLK3-201ENST00000345005 LRRCC1Q9C099 1032 aa15.79■□□□□ 0.12
CLK3-201ENST00000345005 BCL9LQ86UU0 1499 aa15.79■□□□□ 0.12
CLK3-201ENST00000345005 APBB1O00213 710 aa15.78■□□□□ 0.12
CLK3-201ENST00000345005 SRGAP3O43295 1099 aa15.78■□□□□ 0.12
CLK3-201ENST00000345005 RAB11FIP3O75154 756 aa15.78■□□□□ 0.12
CLK3-201ENST00000345005 PRIM1P49642 420 aaKnown RBP15.78■□□□□ 0.12
CLK3-201ENST00000345005 GCKRQ14397 625 aa15.78■□□□□ 0.12
CLK3-201ENST00000345005 SYTL4Q96C24 671 aaPredicted RBP15.78■□□□□ 0.12
CLK3-201ENST00000345005 RBM42Q9BTD8 480 aaKnown RBP15.78■□□□□ 0.12
CLK3-201ENST00000345005 RTN4Q9NQC3 1192 aaKnown RBP15.78■□□□□ 0.12
CLK3-201ENST00000345005 EXOC6BQ9Y2D4 811 aa15.78■□□□□ 0.12
CLK3-201ENST00000345005 SMARCA5O60264 1052 aaPredicted RBP15.78■□□□□ 0.12
CLK3-201ENST00000345005 GLIPR1L2Q4G1C9 344 aa15.78■□□□□ 0.12
CLK3-201ENST00000345005 HSP90AB4PQ58FF6 505 aa15.78■□□□□ 0.12
CLK3-201ENST00000345005 C16orf71Q8IYS4 520 aaPredicted RBP15.77■□□□□ 0.11
CLK3-201ENST00000345005 MARCH10Q8NA82 808 aaPredicted RBP15.77■□□□□ 0.11
CLK3-201ENST00000345005 SEC24BO95487 1268 aa15.76■□□□□ 0.11
CLK3-201ENST00000345005 DNAJC10Q8IXB1 793 aa15.76■□□□□ 0.11
CLK3-201ENST00000345005 TBC1D32Q96NH3 1257 aa15.76■□□□□ 0.11
CLK3-201ENST00000345005 SURF6O75683 361 aaKnown RBP15.75■□□□□ 0.11
CLK3-201ENST00000345005 TTC22Q5TAA0 569 aa15.75■□□□□ 0.11
CLK3-201ENST00000345005 MEX3CQ5U5Q3 659 aaKnown RBP15.75■□□□□ 0.11
CLK3-201ENST00000345005 TTLL7Q6ZT98 887 aa15.75■□□□□ 0.11
CLK3-201ENST00000345005 FAM98CQ17RN3 349 aaKnown RBP15.74■□□□□ 0.11
CLK3-201ENST00000345005 SUCLG2Q96I99 432 aa15.74■□□□□ 0.11
CLK3-201ENST00000345005 OSBPL3Q9H4L5 887 aa15.74■□□□□ 0.11
CLK3-201ENST00000345005 USP21Q9UK80 565 aa15.74■□□□□ 0.11
CLK3-201ENST00000345005 TJP1Q07157 1748 aa15.74■□□□□ 0.11
CLK3-201ENST00000345005 KIF1BPQ96EK5 621 aa15.73■□□□□ 0.11
CLK3-201ENST00000345005 COL15A1P39059 1388 aa15.73■□□□□ 0.11
CLK3-201ENST00000345005 EIF5BO60841 1220 aaKnown RBP15.73■□□□□ 0.11
CLK3-201ENST00000345005 OTUD7AQ8TE49 926 aaPredicted RBP15.73■□□□□ 0.11
CLK3-201ENST00000345005 KAZALD1Q96I82 304 aa15.73■□□□□ 0.11
CLK3-201ENST00000345005 BICC1Q9H694 974 aaKnown RBP15.73■□□□□ 0.11
CLK3-201ENST00000345005 ANTXR1Q9H6X2 564 aa15.73■□□□□ 0.11
CLK3-201ENST00000345005 ATP5J2-PTCD1G3V325 749 aa15.72■□□□□ 0.11
CLK3-201ENST00000345005 CYP19A1P11511 503 aaPredicted RBP15.72■□□□□ 0.11
CLK3-201ENST00000345005 PDE1AP54750 535 aa15.72■□□□□ 0.11
CLK3-201ENST00000345005 ISY1Q9ULR0 285 aaKnown RBP15.72■□□□□ 0.11
CLK3-201ENST00000345005 A0A087WZG4 1122 aa15.71■□□□□ 0.11
CLK3-201ENST00000345005 KIF6Q6ZMV9 814 aa15.71■□□□□ 0.11
CLK3-201ENST00000345005 CCDC191Q8NCU4 936 aa15.71■□□□□ 0.11
CLK3-201ENST00000345005 RHPN1Q8TCX5 695 aa15.71■□□□□ 0.11
CLK3-201ENST00000345005 ACSBG1Q96GR2 724 aa15.71■□□□□ 0.11
CLK3-201ENST00000345005 SLC4A9Q96Q91 983 aa15.71■□□□□ 0.11
CLK3-201ENST00000345005 CWC25Q9NXE8 425 aaPredicted RBP15.71■□□□□ 0.11
CLK3-201ENST00000345005 TUBGCP6Q96RT7 1819 aa15.71■□□□□ 0.11
CLK3-201ENST00000345005 CDC45O75419 566 aa15.71■□□□□ 0.1
CLK3-201ENST00000345005 GSPT1P15170 499 aaKnown RBP15.71■□□□□ 0.1
CLK3-201ENST00000345005 ERC1Q8IUD2 1116 aa15.71■□□□□ 0.1
CLK3-201ENST00000345005 ZBTB3Q9H5J0 574 aa15.71■□□□□ 0.1
CLK3-201ENST00000345005 CICQ96RK0 1608 aaPredicted RBP15.7■□□□□ 0.1
CLK3-201ENST00000345005 A0A0G2JS52 829 aa15.7■□□□□ 0.1
CLK3-201ENST00000345005 OS9Q13438 667 aaPredicted RBP15.7■□□□□ 0.1
CLK3-201ENST00000345005 SMARCC1Q92922 1105 aaPredicted RBP15.7■□□□□ 0.1
CLK3-201ENST00000345005 STAP2Q9UGK3 403 aa15.7■□□□□ 0.1
CLK3-201ENST00000345005 AFF2P51816 1311 aa15.7■□□□□ 0.1
CLK3-201ENST00000345005 SALL3Q9BXA9 1300 aa15.7■□□□□ 0.1
CLK3-201ENST00000345005 NUP98P52948 1817 aa15.69■□□□□ 0.1
CLK3-201ENST00000345005 H7C1W4 665 aa15.69■□□□□ 0.1
CLK3-201ENST00000345005 MX1P20591 662 aa15.69■□□□□ 0.1
CLK3-201ENST00000345005 UBE3BQ7Z3V4 1068 aa15.69■□□□□ 0.1
CLK3-201ENST00000345005 AK9Q5TCS8 1911 aa15.69■□□□□ 0.1
CLK3-201ENST00000345005 AOX1Q06278 1338 aa15.69■□□□□ 0.1
CLK3-201ENST00000345005 THSD7AQ9UPZ6 1657 aa15.69■□□□□ 0.1
CLK3-201ENST00000345005 ANKRD36CQ5JPF3 1778 aa15.69■□□□□ 0.1
CLK3-201ENST00000345005 PTMSP20962 102 aa15.68■□□□□ 0.1
CLK3-201ENST00000345005 TRIM28Q13263 835 aaKnown RBP15.68■□□□□ 0.1
CLK3-201ENST00000345005 TCIRG1Q13488 830 aa15.68■□□□□ 0.1
CLK3-201ENST00000345005 TBC1D9Q6ZT07 1266 aa15.68■□□□□ 0.1
CLK3-201ENST00000345005 CHMP5Q9NZZ3 219 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms