RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 CEP85Q6P2H3 762 aa5.2□□□□□ -1.58
MCF2-201ENST00000338585 DNAJC10Q8IXB1 793 aa5.2□□□□□ -1.58
MCF2-201ENST00000338585 SMC5Q8IY18 1101 aa5.2□□□□□ -1.58
MCF2-201ENST00000338585 SRCIN1Q9C0H9 1055 aa5.2□□□□□ -1.58
MCF2-201ENST00000338585 N4BP2Q86UW6 1770 aaPredicted RBP5.2□□□□□ -1.58
MCF2-201ENST00000338585 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.2□□□□□ -1.58
MCF2-201ENST00000338585 NPM3O75607 178 aaKnown RBP5.2□□□□□ -1.58
MCF2-201ENST00000338585 PTF1AQ7RTS3 328 aa5.2□□□□□ -1.58
MCF2-201ENST00000338585 NBPF7P0C2Y1 421 aaPredicted RBP5.19□□□□□ -1.58
MCF2-201ENST00000338585 ANKRD44Q8N8A2 993 aa5.19□□□□□ -1.58
MCF2-201ENST00000338585 GJD4Q96KN9 370 aaPredicted RBP5.19□□□□□ -1.58
MCF2-201ENST00000338585 LRRFIP2Q9Y608 721 aaKnown RBP5.19□□□□□ -1.58
MCF2-201ENST00000338585 DDX58O95786 925 aaKnown RBP5.19□□□□□ -1.58
MCF2-201ENST00000338585 GNAI2P04899 355 aa5.19□□□□□ -1.58
MCF2-201ENST00000338585 IGKV5-2P06315 115 aa5.19□□□□□ -1.58
MCF2-201ENST00000338585 PDE4AP27815 886 aa5.19□□□□□ -1.58
MCF2-201ENST00000338585 TTLL7Q6ZT98 887 aa5.19□□□□□ -1.58
MCF2-201ENST00000338585 RIC3Q7Z5B4 369 aa5.19□□□□□ -1.58
MCF2-201ENST00000338585 THSD7AQ9UPZ6 1657 aa5.19□□□□□ -1.58
MCF2-201ENST00000338585 PNMA6EA0A0J9YXQ4 647 aa5.19□□□□□ -1.58
MCF2-201ENST00000338585 GNAI3P08754 354 aa5.19□□□□□ -1.58
MCF2-201ENST00000338585 UBTFL1P0CB47 393 aaPredicted RBP5.19□□□□□ -1.58
MCF2-201ENST00000338585 ANKRD13DQ6ZTN6 518 aa5.19□□□□□ -1.58
MCF2-201ENST00000338585 RPAP2Q8IXW5 612 aaPredicted RBP5.19□□□□□ -1.58
MCF2-201ENST00000338585 MYD88Q99836 296 aa5.19□□□□□ -1.58
MCF2-201ENST00000338585 LNPKQ9C0E8 428 aa5.19□□□□□ -1.58
MCF2-201ENST00000338585 BCL11AQ9H165 835 aa5.19□□□□□ -1.58
MCF2-201ENST00000338585 ZNF330Q9Y3S2 320 aaPredicted RBP5.19□□□□□ -1.58
MCF2-201ENST00000338585 ATRNO75882 1429 aa5.19□□□□□ -1.58
MCF2-201ENST00000338585 APBB1O00213 710 aa5.18□□□□□ -1.58
MCF2-201ENST00000338585 NUCB1Q02818 461 aa5.18□□□□□ -1.58
MCF2-201ENST00000338585 VSIG10Q8N0Z9 540 aa5.18□□□□□ -1.58
MCF2-201ENST00000338585 LINS1Q8NG48 757 aa5.18□□□□□ -1.58
MCF2-201ENST00000338585 METTL22Q9BUU2 404 aaPredicted RBP5.18□□□□□ -1.58
MCF2-201ENST00000338585 RBM19Q9Y4C8 960 aaKnown RBP5.18□□□□□ -1.58
MCF2-201ENST00000338585 ERBB4Q15303 1308 aa5.18□□□□□ -1.58
MCF2-201ENST00000338585 ATP5J2-PTCD1G3V325 749 aa5.18□□□□□ -1.58
MCF2-201ENST00000338585 ALDH1L1O75891 902 aa5.18□□□□□ -1.58
MCF2-201ENST00000338585 CYP19A1P11511 503 aaPredicted RBP5.18□□□□□ -1.58
MCF2-201ENST00000338585 ANKRD45Q5TZF3 282 aa5.18□□□□□ -1.58
MCF2-201ENST00000338585 JARID2Q92833 1246 aaPredicted RBP5.18□□□□□ -1.58
MCF2-201ENST00000338585 ZBTB3Q9H5J0 574 aa5.18□□□□□ -1.58
MCF2-201ENST00000338585 DCTPP1Q9H773 170 aa5.18□□□□□ -1.58
MCF2-201ENST00000338585 TRPC5Q9UL62 973 aaPredicted RBP5.18□□□□□ -1.58
MCF2-201ENST00000338585 ARFGEF2Q9Y6D5 1785 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 TJP1Q07157 1748 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 PALLDQ8WX93 1383 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 NEURL1BA8MQ27 555 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 KCNQ4P56696 695 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 ATP8B2P98198 1209 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 ITPK1Q13572 414 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 CHD1LQ86WJ1 897 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 SEPT12Q8IYM1 358 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 PLBD2Q8NHP8 589 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 GCC1Q96CN9 775 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 QTRT2Q9H974 415 aaKnown RBP5.17□□□□□ -1.58
MCF2-201ENST00000338585 C9orf78Q9NZ63 289 aaPredicted RBP5.17□□□□□ -1.58
MCF2-201ENST00000338585 ZBTB1Q9Y2K1 713 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 LOC102724428A0A0B4J2F2 783 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 GRM8O00222 908 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 SMARCA5O60264 1052 aaPredicted RBP5.17□□□□□ -1.58
MCF2-201ENST00000338585 STARD3NLO95772 234 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 SIK1P57059 783 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 NEXNQ0ZGT2 675 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 GCKRQ14397 625 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 PPP1R42Q7Z4L9 355 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 KAZALD1Q96I82 304 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 SUCLG2Q96I99 432 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 TEX13AQ9BXU3 409 aaPredicted RBP5.17□□□□□ -1.58
MCF2-201ENST00000338585 EXOC6BQ9Y2D4 811 aa5.17□□□□□ -1.58
MCF2-201ENST00000338585 NUP188Q5SRE5 1749 aa5.16□□□□□ -1.58
MCF2-201ENST00000338585 ONECUT3O60422 494 aaPredicted RBP5.16□□□□□ -1.58
MCF2-201ENST00000338585 ATP6V1AP38606 617 aa5.16□□□□□ -1.58
MCF2-201ENST00000338585 C16orf71Q8IYS4 520 aaPredicted RBP5.16□□□□□ -1.58
MCF2-201ENST00000338585 ARXQ96QS3 562 aa5.16□□□□□ -1.58
MCF2-201ENST00000338585 BACH2Q9BYV9 841 aa5.16□□□□□ -1.58
MCF2-201ENST00000338585 UTYO14607 1347 aa5.16□□□□□ -1.58
MCF2-201ENST00000338585 SRGAP3O43295 1099 aa5.16□□□□□ -1.58
MCF2-201ENST00000338585 HMMRO75330 724 aa5.16□□□□□ -1.58
MCF2-201ENST00000338585 C8orf34Q49A92 452 aa5.16□□□□□ -1.58
MCF2-201ENST00000338585 RTL5Q5HYW3 569 aaPredicted RBP5.16□□□□□ -1.58
MCF2-201ENST00000338585 OTUD7AQ8TE49 926 aaPredicted RBP5.16□□□□□ -1.58
MCF2-201ENST00000338585 AFDNP55196 1824 aaKnown RBP5.16□□□□□ -1.58
MCF2-201ENST00000338585 CRKLP46109 303 aaKnown RBP5.15□□□□□ -1.58
MCF2-201ENST00000338585 HLFQ16534 295 aa5.15□□□□□ -1.58
MCF2-201ENST00000338585 EPHA10Q5JZY3 1008 aa5.15□□□□□ -1.58
MCF2-201ENST00000338585 INTS5Q6P9B9 1019 aaKnown RBP5.15□□□□□ -1.58
MCF2-201ENST00000338585 UBE3BQ7Z3V4 1068 aa5.15□□□□□ -1.58
MCF2-201ENST00000338585 SSH3Q8TE77 659 aa5.15□□□□□ -1.58
MCF2-201ENST00000338585 BICC1Q9H694 974 aaKnown RBP5.15□□□□□ -1.58
MCF2-201ENST00000338585 A0A087WZG4 1122 aa5.15□□□□□ -1.59
MCF2-201ENST00000338585 FAM161AQ3B820 660 aa5.15□□□□□ -1.59
MCF2-201ENST00000338585 SMARCC1Q92922 1105 aaPredicted RBP5.15□□□□□ -1.59
MCF2-201ENST00000338585 TBC1D2BQ9UPU7 963 aa5.15□□□□□ -1.59
MCF2-201ENST00000338585 BTAF1O14981 1849 aa5.15□□□□□ -1.59
MCF2-201ENST00000338585 MYH14Q7Z406 1995 aaKnown RBP5.15□□□□□ -1.59
MCF2-201ENST00000338585 CASP7P55210 303 aa5.15□□□□□ -1.59
MCF2-201ENST00000338585 KIF6Q6ZMV9 814 aa5.15□□□□□ -1.59
MCF2-201ENST00000338585 SMIM5Q71RC9 77 aa5.15□□□□□ -1.59
MCF2-201ENST00000338585 LINC00116Q8NCU8 138 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms