RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 NEURL1BA8MQ27 555 aa19.28■□□□□ 0.68
LIMS1-202ENST00000338045 GJD4Q96KN9 370 aaPredicted RBP19.28■□□□□ 0.68
LIMS1-202ENST00000338045 HDAC5Q9UQL6 1122 aa19.28■□□□□ 0.68
LIMS1-202ENST00000338045 GRM8O00222 908 aa19.28■□□□□ 0.68
LIMS1-202ENST00000338045 SSH3Q8TE77 659 aa19.28■□□□□ 0.68
LIMS1-202ENST00000338045 ACSBG1Q96GR2 724 aa19.28■□□□□ 0.68
LIMS1-202ENST00000338045 MYD88Q99836 296 aa19.27■□□□□ 0.68
LIMS1-202ENST00000338045 C9orf78Q9NZ63 289 aaPredicted RBP19.27■□□□□ 0.68
LIMS1-202ENST00000338045 TJP1Q07157 1748 aa19.27■□□□□ 0.67
LIMS1-202ENST00000338045 NUP188Q5SRE5 1749 aa19.27■□□□□ 0.67
LIMS1-202ENST00000338045 ONECUT3O60422 494 aaPredicted RBP19.26■□□□□ 0.67
LIMS1-202ENST00000338045 CYP19A1P11511 503 aaPredicted RBP19.26■□□□□ 0.67
LIMS1-202ENST00000338045 MTX1Q13505 466 aa19.26■□□□□ 0.67
LIMS1-202ENST00000338045 TTLL7Q6ZT98 887 aa19.26■□□□□ 0.67
LIMS1-202ENST00000338045 CICQ96RK0 1608 aaPredicted RBP19.26■□□□□ 0.67
LIMS1-202ENST00000338045 POLA2Q14181 598 aa19.26■□□□□ 0.67
LIMS1-202ENST00000338045 GCKRQ14397 625 aa19.26■□□□□ 0.67
LIMS1-202ENST00000338045 TRPC5Q9UL62 973 aaPredicted RBP19.26■□□□□ 0.67
LIMS1-202ENST00000338045 PPP1R42Q7Z4L9 355 aa19.24■□□□□ 0.67
LIMS1-202ENST00000338045 SMARCC1Q92922 1105 aaPredicted RBP19.23■□□□□ 0.67
LIMS1-202ENST00000338045 COL15A1P39059 1388 aa19.23■□□□□ 0.67
LIMS1-202ENST00000338045 KCNQ2O43526 872 aa19.22■□□□□ 0.67
LIMS1-202ENST00000338045 KAZALD1Q96I82 304 aa19.22■□□□□ 0.67
LIMS1-202ENST00000338045 PALLDQ8WX93 1383 aa19.22■□□□□ 0.67
LIMS1-202ENST00000338045 LOC102724428A0A0B4J2F2 783 aa19.22■□□□□ 0.67
LIMS1-202ENST00000338045 A0A0G2JS52 829 aa19.22■□□□□ 0.67
LIMS1-202ENST00000338045 SIK1P57059 783 aa19.22■□□□□ 0.67
LIMS1-202ENST00000338045 SUCLG2Q96I99 432 aa19.22■□□□□ 0.67
LIMS1-202ENST00000338045 SRGAP3O43295 1099 aa19.21■□□□□ 0.67
LIMS1-202ENST00000338045 ZNF831Q5JPB2 1677 aa19.2■□□□□ 0.66
LIMS1-202ENST00000338045 ZBTB47Q9UFB7 747 aaPredicted RBP19.2■□□□□ 0.66
LIMS1-202ENST00000338045 EXOC6BQ9Y2D4 811 aa19.2■□□□□ 0.66
LIMS1-202ENST00000338045 AFDNP55196 1824 aaKnown RBP19.2■□□□□ 0.66
LIMS1-202ENST00000338045 ATP5J2-PTCD1G3V325 749 aa19.2■□□□□ 0.66
LIMS1-202ENST00000338045 ZBTB1Q9Y2K1 713 aa19.2■□□□□ 0.66
LIMS1-202ENST00000338045 IL6STP40189 918 aaPredicted RBP19.19■□□□□ 0.66
LIMS1-202ENST00000338045 PLEKHM2Q8IWE5 1019 aa19.19■□□□□ 0.66
LIMS1-202ENST00000338045 ZBTB3Q9H5J0 574 aa19.19■□□□□ 0.66
LIMS1-202ENST00000338045 RREB1Q92766 1687 aa19.19■□□□□ 0.66
LIMS1-202ENST00000338045 CASP7P55210 303 aa19.18■□□□□ 0.66
LIMS1-202ENST00000338045 BMP2KLQ5H9B9 411 aa19.18■□□□□ 0.66
LIMS1-202ENST00000338045 BICC1Q9H694 974 aaKnown RBP19.18■□□□□ 0.66
LIMS1-202ENST00000338045 NHSQ6T4R5 1651 aa19.18■□□□□ 0.66
LIMS1-202ENST00000338045 SMARCA5O60264 1052 aaPredicted RBP19.18■□□□□ 0.66
LIMS1-202ENST00000338045 RAB11FIP3O75154 756 aa19.18■□□□□ 0.66
LIMS1-202ENST00000338045 ATP6V1AP38606 617 aa19.18■□□□□ 0.66
LIMS1-202ENST00000338045 KIF6Q6ZMV9 814 aa19.18■□□□□ 0.66
LIMS1-202ENST00000338045 CCDC191Q8NCU4 936 aa19.18■□□□□ 0.66
LIMS1-202ENST00000338045 ISCA1Q9BUE6 129 aa19.18■□□□□ 0.66
LIMS1-202ENST00000338045 LRRCC1Q9C099 1032 aa19.18■□□□□ 0.66
LIMS1-202ENST00000338045 NOP58Q9Y2X3 529 aaKnown RBP19.18■□□□□ 0.66
LIMS1-202ENST00000338045 MAP3K15Q6ZN16 1313 aa19.17■□□□□ 0.66
LIMS1-202ENST00000338045 H7C1W4 665 aa19.17■□□□□ 0.66
LIMS1-202ENST00000338045 TRIM28Q13263 835 aaKnown RBP19.17■□□□□ 0.66
LIMS1-202ENST00000338045 TCIRG1Q13488 830 aa19.17■□□□□ 0.66
LIMS1-202ENST00000338045 INTS5Q6P9B9 1019 aaKnown RBP19.17■□□□□ 0.66
LIMS1-202ENST00000338045 QTRT2Q9H974 415 aaKnown RBP19.17■□□□□ 0.66
LIMS1-202ENST00000338045 CWC25Q9NXE8 425 aaPredicted RBP19.17■□□□□ 0.66
LIMS1-202ENST00000338045 A0A087WZG4 1122 aa19.16■□□□□ 0.66
LIMS1-202ENST00000338045 APBB1O00213 710 aa19.16■□□□□ 0.66
LIMS1-202ENST00000338045 ITPK1Q13572 414 aa19.16■□□□□ 0.66
LIMS1-202ENST00000338045 SEPT12Q8IYM1 358 aa19.16■□□□□ 0.66
LIMS1-202ENST00000338045 C16orf71Q8IYS4 520 aaPredicted RBP19.16■□□□□ 0.66
LIMS1-202ENST00000338045 SURF6O75683 361 aaKnown RBP19.16■□□□□ 0.66
LIMS1-202ENST00000338045 RABL6Q3YEC7 729 aaPredicted RBP19.16■□□□□ 0.66
LIMS1-202ENST00000338045 CCDC87Q9NVE4 849 aa19.16■□□□□ 0.66
LIMS1-202ENST00000338045 EIF5P55010 431 aaKnown RBP19.15■□□□□ 0.66
LIMS1-202ENST00000338045 HSP90AB4PQ58FF6 505 aa19.15■□□□□ 0.66
LIMS1-202ENST00000338045 UBE3BQ7Z3V4 1068 aa19.15■□□□□ 0.66
LIMS1-202ENST00000338045 ZNF330Q9Y3S2 320 aaPredicted RBP19.15■□□□□ 0.66
LIMS1-202ENST00000338045 CRKLP46109 303 aaKnown RBP19.14■□□□□ 0.65
LIMS1-202ENST00000338045 EPHA10Q5JZY3 1008 aa19.14■□□□□ 0.65
LIMS1-202ENST00000338045 GIGYF2Q6Y7W6 1299 aaKnown RBP19.14■□□□□ 0.65
LIMS1-202ENST00000338045 OTUD7AQ8TE49 926 aaPredicted RBP19.14■□□□□ 0.65
LIMS1-202ENST00000338045 SALL3Q9BXA9 1300 aa19.14■□□□□ 0.65
LIMS1-202ENST00000338045 COL5A3P25940 1745 aaPredicted RBP19.14■□□□□ 0.65
LIMS1-202ENST00000338045 ERVV-1B6SEH8 477 aa19.14■□□□□ 0.65
LIMS1-202ENST00000338045 PTF1AQ7RTS3 328 aa19.14■□□□□ 0.65
LIMS1-202ENST00000338045 OSBPL3Q9H4L5 887 aa19.14■□□□□ 0.65
LIMS1-202ENST00000338045 KIF1BPQ96EK5 621 aa19.13■□□□□ 0.65
LIMS1-202ENST00000338045 BTAF1O14981 1849 aa19.13■□□□□ 0.65
LIMS1-202ENST00000338045 EIF5BO60841 1220 aaKnown RBP19.12■□□□□ 0.65
LIMS1-202ENST00000338045 HSP90AB3PQ58FF7 597 aa19.12■□□□□ 0.65
LIMS1-202ENST00000338045 MYH14Q7Z406 1995 aaKnown RBP19.12■□□□□ 0.65
LIMS1-202ENST00000338045 TTC22Q5TAA0 569 aa19.11■□□□□ 0.65
LIMS1-202ENST00000338045 RHPN1Q8TCX5 695 aa19.11■□□□□ 0.65
LIMS1-202ENST00000338045 SBF2Q86WG5 1849 aa19.11■□□□□ 0.65
LIMS1-202ENST00000338045 GSPT1P15170 499 aaKnown RBP19.11■□□□□ 0.65
LIMS1-202ENST00000338045 HLFQ16534 295 aa19.11■□□□□ 0.65
LIMS1-202ENST00000338045 FAM182BQ5T319 152 aa19.11■□□□□ 0.65
LIMS1-202ENST00000338045 DZIP3Q86Y13 1208 aaKnown RBP19.11■□□□□ 0.65
LIMS1-202ENST00000338045 JARID2Q92833 1246 aaPredicted RBP19.11■□□□□ 0.65
LIMS1-202ENST00000338045 SEC24BO95487 1268 aa19.09■□□□□ 0.65
LIMS1-202ENST00000338045 PDE1AP54750 535 aa19.09■□□□□ 0.65
LIMS1-202ENST00000338045 FOXO4P98177 505 aa19.09■□□□□ 0.65
LIMS1-202ENST00000338045 NPM2Q86SE8 214 aaKnown RBP19.09■□□□□ 0.65
LIMS1-202ENST00000338045 ANKRD36CQ5JPF3 1778 aa19.09■□□□□ 0.65
LIMS1-202ENST00000338045 ERC1Q8IUD2 1116 aa19.09■□□□□ 0.65
LIMS1-202ENST00000338045 STAP2Q9UGK3 403 aa19.09■□□□□ 0.65
LIMS1-202ENST00000338045 PA2G4Q9UQ80 394 aaKnown RBP19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms