RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CAVIN2O95810 425 aa13.38□□□□□ -0.27
VPS39-201ENST00000318006 KRT28Q7Z3Y7 464 aa13.38□□□□□ -0.27
VPS39-201ENST00000318006 CKAP2LQ8IYA6 745 aa13.38□□□□□ -0.27
VPS39-201ENST00000318006 TEX14Q8IWB6 1497 aa13.38□□□□□ -0.27
VPS39-201ENST00000318006 CDKL5O76039 1030 aa13.37□□□□□ -0.27
VPS39-201ENST00000318006 RIMS2Q9UQ26 1411 aa13.37□□□□□ -0.27
VPS39-201ENST00000318006 CCAR1Q8IX12 1150 aaKnown RBP13.37□□□□□ -0.27
VPS39-201ENST00000318006 UBE2HP62256 183 aa13.37□□□□□ -0.27
VPS39-201ENST00000318006 CDK5RAP3Q96JB5 506 aa13.37□□□□□ -0.27
VPS39-201ENST00000318006 CCDC43Q96MW1 224 aaKnown RBP13.37□□□□□ -0.27
VPS39-201ENST00000318006 BOLA2Q9H3K6 86 aa13.37□□□□□ -0.27
VPS39-201ENST00000318006 GDPD2Q9HCC8 539 aa13.37□□□□□ -0.27
VPS39-201ENST00000318006 GOLGA6L9A6NEM1 432 aa13.37□□□□□ -0.27
VPS39-201ENST00000318006 HCLS1P14317 486 aaPredicted RBP13.37□□□□□ -0.27
VPS39-201ENST00000318006 AEBP2Q6ZN18 517 aaPredicted RBP13.37□□□□□ -0.27
VPS39-201ENST00000318006 AKAP2Q9Y2D5 859 aa13.37□□□□□ -0.27
VPS39-201ENST00000318006 PPIP5K1Q6PFW1 1433 aa13.37□□□□□ -0.27
VPS39-201ENST00000318006 CCDC69A6NI79 296 aa13.36□□□□□ -0.27
VPS39-201ENST00000318006 PER1O15534 1290 aaPredicted RBP13.36□□□□□ -0.27
VPS39-201ENST00000318006 MNAT1P51948 309 aa13.36□□□□□ -0.27
VPS39-201ENST00000318006 HDAC1Q13547 482 aaPredicted RBP13.36□□□□□ -0.27
VPS39-201ENST00000318006 RRAGDQ9NQL2 400 aaPredicted RBP13.36□□□□□ -0.27
VPS39-201ENST00000318006 IVLP07476 585 aa13.36□□□□□ -0.27
VPS39-201ENST00000318006 IBSPP21815 317 aaPredicted RBP13.36□□□□□ -0.27
VPS39-201ENST00000318006 ZNF165P49910 485 aa13.36□□□□□ -0.27
VPS39-201ENST00000318006 SEPT7Q16181 437 aaKnown RBP13.36□□□□□ -0.27
VPS39-201ENST00000318006 IMMTQ16891 758 aaKnown RBP13.36□□□□□ -0.27
VPS39-201ENST00000318006 SAMD1Q6SPF0 538 aaPredicted RBP13.36□□□□□ -0.27
VPS39-201ENST00000318006 LIMCH1Q9UPQ0 1083 aa13.36□□□□□ -0.27
VPS39-201ENST00000318006 METTL24Q5JXM2 366 aa13.36□□□□□ -0.27
VPS39-201ENST00000318006 CARD14Q9BXL6 1004 aa13.36□□□□□ -0.27
VPS39-201ENST00000318006 PIK3C2GO75747 1445 aa13.36□□□□□ -0.27
VPS39-201ENST00000318006 IDH1O75874 414 aaKnown RBP13.36□□□□□ -0.27
VPS39-201ENST00000318006 IRX3P78415 501 aaPredicted RBP13.36□□□□□ -0.27
VPS39-201ENST00000318006 C8orf34Q49A92 452 aa13.36□□□□□ -0.27
VPS39-201ENST00000318006 PRPF40BQ6NWY9 871 aaKnown RBP13.36□□□□□ -0.27
VPS39-201ENST00000318006 TBC1D9Q6ZT07 1266 aa13.36□□□□□ -0.27
VPS39-201ENST00000318006 TAF4BQ92750 862 aa13.36□□□□□ -0.27
VPS39-201ENST00000318006 POLKQ9UBT6 870 aa13.36□□□□□ -0.27
VPS39-201ENST00000318006 IGHMBP2P38935 993 aaKnown RBP13.35□□□□□ -0.27
VPS39-201ENST00000318006 RNF187Q5TA31 235 aaPredicted RBP13.35□□□□□ -0.27
VPS39-201ENST00000318006 ZNF830Q96NB3 372 aaPredicted RBP13.35□□□□□ -0.27
VPS39-201ENST00000318006 PIK3R4Q99570 1358 aa13.35□□□□□ -0.27
VPS39-201ENST00000318006 ADGRL2O95490 1459 aa13.35□□□□□ -0.27
VPS39-201ENST00000318006 EIF5P55010 431 aaKnown RBP13.35□□□□□ -0.27
VPS39-201ENST00000318006 TDO2P48775 406 aa13.34□□□□□ -0.27
VPS39-201ENST00000318006 IKQ13123 557 aaPredicted RBP13.34□□□□□ -0.27
VPS39-201ENST00000318006 IFNL2Q8IZJ0 200 aa13.34□□□□□ -0.27
VPS39-201ENST00000318006 STK11IPQ8N1F8 1099 aa13.34□□□□□ -0.27
VPS39-201ENST00000318006 FEZ1Q99689 392 aa13.34□□□□□ -0.27
VPS39-201ENST00000318006 NOL7Q9UMY1 257 aaKnown RBP13.34□□□□□ -0.27
VPS39-201ENST00000318006 PCDHB15Q9Y5E8 787 aa13.34□□□□□ -0.27
VPS39-201ENST00000318006 SYCP1Q15431 976 aa13.34□□□□□ -0.27
VPS39-201ENST00000318006 STX1AQ16623 288 aa13.34□□□□□ -0.27
VPS39-201ENST00000318006 CCDC8Q9H0W5 538 aaPredicted RBP13.34□□□□□ -0.27
VPS39-201ENST00000318006 UHRF1BP1Q6BDS2 1440 aa13.34□□□□□ -0.27
VPS39-201ENST00000318006 U3KPZ7 1027 aaPredicted RBP13.34□□□□□ -0.27
VPS39-201ENST00000318006 PI4KAP2A4QPH2 592 aa13.34□□□□□ -0.27
VPS39-201ENST00000318006 STX6O43752 255 aa13.34□□□□□ -0.27
VPS39-201ENST00000318006 PI4KAP1Q8N8J0 262 aa13.34□□□□□ -0.27
VPS39-201ENST00000318006 CCDC150Q8NCX0 1101 aa13.34□□□□□ -0.27
VPS39-201ENST00000318006 LRP2BPQ9P2M1 347 aa13.34□□□□□ -0.27
VPS39-201ENST00000318006 A0A087WZG4 1122 aa13.33□□□□□ -0.27
VPS39-201ENST00000318006 KIF20AO95235 890 aa13.33□□□□□ -0.27
VPS39-201ENST00000318006 TMC6Q7Z403 805 aa13.33□□□□□ -0.27
VPS39-201ENST00000318006 ANKRD24Q8TF21 1146 aa13.33□□□□□ -0.27
VPS39-201ENST00000318006 NUP133Q8WUM0 1156 aa13.33□□□□□ -0.27
VPS39-201ENST00000318006 SNX21Q969T3 373 aa13.33□□□□□ -0.27
VPS39-201ENST00000318006 TANGO6Q9C0B7 1094 aa13.33□□□□□ -0.27
VPS39-201ENST00000318006 MAP3K2Q9Y2U5 619 aa13.33□□□□□ -0.27
VPS39-201ENST00000318006 TICAM2Q86XR7 235 aa13.33□□□□□ -0.28
VPS39-201ENST00000318006 RAI14Q9P0K7 980 aa13.33□□□□□ -0.28
VPS39-201ENST00000318006 IFIT1P09914 478 aaKnown RBP13.33□□□□□ -0.28
VPS39-201ENST00000318006 RBM25P49756 843 aaKnown RBP13.33□□□□□ -0.28
VPS39-201ENST00000318006 AIDAQ96BJ3 306 aa13.33□□□□□ -0.28
VPS39-201ENST00000318006 ANKRD18AQ8IVF6 992 aa13.33□□□□□ -0.28
VPS39-201ENST00000318006 UBAC1Q9BSL1 405 aa13.33□□□□□ -0.28
VPS39-201ENST00000318006 ECHDC1Q9NTX5 307 aa13.33□□□□□ -0.28
VPS39-201ENST00000318006 CTR9Q6PD62 1173 aa13.32□□□□□ -0.28
VPS39-201ENST00000318006 OGFRQ9NZT2 677 aa13.32□□□□□ -0.28
VPS39-201ENST00000318006 NUCB1Q02818 461 aa13.32□□□□□ -0.28
VPS39-201ENST00000318006 EIF4A2Q14240 407 aaKnown RBP13.32□□□□□ -0.28
VPS39-201ENST00000318006 PPP1R42Q7Z4L9 355 aa13.32□□□□□ -0.28
VPS39-201ENST00000318006 ARFGAP3Q9NP61 516 aa13.32□□□□□ -0.28
VPS39-201ENST00000318006 COL17A1Q9UMD9 1497 aaPredicted RBP13.32□□□□□ -0.28
VPS39-201ENST00000318006 MAP2K1Q02750 393 aaPredicted RBP13.32□□□□□ -0.28
VPS39-201ENST00000318006 IFIT5Q13325 482 aaKnown RBP13.32□□□□□ -0.28
VPS39-201ENST00000318006 SPA17Q15506 151 aa13.32□□□□□ -0.28
VPS39-201ENST00000318006 CADPS2Q86UW7 1296 aa13.32□□□□□ -0.28
VPS39-201ENST00000318006 ZNF397Q8NF99 534 aaPredicted RBP13.32□□□□□ -0.28
VPS39-201ENST00000318006 SPINK5Q9NQ38 1064 aaPredicted RBP13.32□□□□□ -0.28
VPS39-201ENST00000318006 FBXO3Q9UK99 471 aa13.32□□□□□ -0.28
VPS39-201ENST00000318006 PIP4K2BP78356 416 aa13.31□□□□□ -0.28
VPS39-201ENST00000318006 TTC22Q5TAA0 569 aa13.31□□□□□ -0.28
VPS39-201ENST00000318006 C8orf58Q8NAV2 365 aa13.31□□□□□ -0.28
VPS39-201ENST00000318006 TTC12Q9H892 705 aaPredicted RBP13.31□□□□□ -0.28
VPS39-201ENST00000318006 ZRANB1Q9UGI0 708 aa13.31□□□□□ -0.28
VPS39-201ENST00000318006 ZNF652Q9Y2D9 606 aa13.31□□□□□ -0.28
VPS39-201ENST00000318006 SLU7O95391 586 aaKnown RBP13.31□□□□□ -0.28
VPS39-201ENST00000318006 KRT18P05783 430 aaKnown RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms