RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 SPTY2D1Q68D10 685 aaPredicted RBP13.5□□□□□ -0.25
SHROOM3-201ENST00000296043 GGT6Q6P531 493 aa13.5□□□□□ -0.25
SHROOM3-201ENST00000296043 HOMEZQ8IX15 550 aa13.5□□□□□ -0.25
SHROOM3-201ENST00000296043 LRRC43Q8N309 656 aa13.5□□□□□ -0.25
SHROOM3-201ENST00000296043 CEP85LQ5SZL2 805 aa13.5□□□□□ -0.25
SHROOM3-201ENST00000296043 CCDC170Q8IYT3 715 aa13.5□□□□□ -0.25
SHROOM3-201ENST00000296043 TACO1Q9BSH4 297 aaKnown RBP13.5□□□□□ -0.25
SHROOM3-201ENST00000296043 KARSQ15046 597 aaKnown RBP13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 RIC3Q7Z5B4 369 aa13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 SMARCA5O60264 1052 aaPredicted RBP13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 DDX19AQ9NUU7 478 aaKnown RBP13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 IKBKGQ9Y6K9 419 aa13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 PSMD1Q99460 953 aa13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 SYT1P21579 422 aa13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 HS1BP3Q53T59 392 aa13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 SEC62Q99442 399 aaKnown RBP13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 TBC1D2BQ9UPU7 963 aa13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 AK9Q5TCS8 1911 aa13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 UBE2HP62256 183 aa13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 MYRIPQ8NFW9 859 aa13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 TSC1Q92574 1164 aa13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 SLC3A2P08195 630 aaKnown RBP13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 CETN2P41208 172 aa13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 GUCY1B3Q02153 619 aa13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 DBN1Q16643 649 aa13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 OAS2P29728 719 aaKnown RBP13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 IFT81Q8WYA0 676 aa13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 UACAQ9BZF9 1416 aa13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 EVC2Q86UK5 1308 aa13.49□□□□□ -0.25
SHROOM3-201ENST00000296043 ZC3H6P61129 1189 aaKnown RBP13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 PNMA8AQ86V59 439 aaPredicted RBP13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 CACNA2D3Q8IZS8 1091 aa13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 PFDN1O60925 122 aa13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 NEK11Q8NG66 645 aa13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 RIPOR2Q9Y4F9 1068 aa13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 PRPF40BQ6NWY9 871 aaKnown RBP13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 TCP11L2Q8N4U5 519 aa13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 TTC36A6NLP5 189 aa13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 SYT10Q6XYQ8 523 aa13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 TFIP11Q9UBB9 837 aaKnown RBP13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 NDUFAB1O14561 156 aa13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 HGSO14964 777 aaPredicted RBP13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 ZSCAN26Q16670 478 aa13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 PPFIBP2Q8ND30 876 aa13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 GNAI3P08754 354 aa13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 TERF1P54274 439 aa13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 MRFAP1Q9Y605 127 aa13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 CCDC38Q502W7 563 aa13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 BAZ1AQ9NRL2 1556 aaPredicted RBP13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 AACSQ86V21 672 aa13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 HMGB1P09429 215 aaKnown RBP13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 FERP16591 822 aa13.48□□□□□ -0.25
SHROOM3-201ENST00000296043 TPD52P55327 224 aaPredicted RBP13.47□□□□□ -0.25
SHROOM3-201ENST00000296043 TTC39AQ5SRH9 613 aa13.47□□□□□ -0.25
SHROOM3-201ENST00000296043 HDGFP51858 240 aaKnown RBP13.47□□□□□ -0.25
SHROOM3-201ENST00000296043 IFT74Q96LB3 600 aa13.47□□□□□ -0.25
SHROOM3-201ENST00000296043 TSPYL2Q9H2G4 693 aaPredicted RBP13.47□□□□□ -0.25
SHROOM3-201ENST00000296043 MTIF2P46199 727 aaKnown RBP13.47□□□□□ -0.25
SHROOM3-201ENST00000296043 PSMC4P43686 418 aa13.47□□□□□ -0.25
SHROOM3-201ENST00000296043 VIMP08670 466 aaKnown RBP13.47□□□□□ -0.25
SHROOM3-201ENST00000296043 SPATS2LQ9NUQ6 558 aaKnown RBP13.47□□□□□ -0.25
SHROOM3-201ENST00000296043 PIP4K2BP78356 416 aa13.47□□□□□ -0.25
SHROOM3-201ENST00000296043 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.47□□□□□ -0.25
SHROOM3-201ENST00000296043 SH2B1Q9NRF2 756 aaPredicted RBP13.46□□□□□ -0.25
SHROOM3-201ENST00000296043 MINK1Q8N4C8 1332 aaPredicted RBP13.46□□□□□ -0.25
SHROOM3-201ENST00000296043 INTS8Q75QN2 995 aaKnown RBP13.46□□□□□ -0.25
SHROOM3-201ENST00000296043 STMN4Q9H169 189 aaPredicted RBP13.46□□□□□ -0.25
SHROOM3-201ENST00000296043 CCDC174Q6PII3 467 aa13.46□□□□□ -0.25
SHROOM3-201ENST00000296043 CAPN7Q9Y6W3 813 aa13.46□□□□□ -0.25
SHROOM3-201ENST00000296043 SETDB1Q15047 1291 aa13.46□□□□□ -0.25
SHROOM3-201ENST00000296043 TTC14Q96N46 770 aa13.46□□□□□ -0.25
SHROOM3-201ENST00000296043 STX6O43752 255 aa13.46□□□□□ -0.25
SHROOM3-201ENST00000296043 ATP2B2Q01814 1243 aa13.46□□□□□ -0.25
SHROOM3-201ENST00000296043 SF3A3Q12874 501 aaKnown RBP eCLIP13.46□□□□□ -0.25
SHROOM3-201ENST00000296043 SH2D4BQ5SQS7 431 aa13.46□□□□□ -0.25
SHROOM3-201ENST00000296043 CEP131Q9UPN4 1083 aa13.46□□□□□ -0.25
SHROOM3-201ENST00000296043 CARMIL1Q5VZK9 1371 aa13.46□□□□□ -0.25
SHROOM3-201ENST00000296043 CTCFLQ8NI51 663 aaPredicted RBP13.46□□□□□ -0.25
SHROOM3-201ENST00000296043 EVCP57679 992 aa13.46□□□□□ -0.26
SHROOM3-201ENST00000296043 ZMAT2Q96NC0 199 aaKnown RBP13.46□□□□□ -0.26
SHROOM3-201ENST00000296043 UBA5Q9GZZ9 404 aa13.46□□□□□ -0.26
SHROOM3-201ENST00000296043 CASQ2O14958 399 aaPredicted RBP13.46□□□□□ -0.26
SHROOM3-201ENST00000296043 UBASH3AP57075 661 aa13.46□□□□□ -0.26
SHROOM3-201ENST00000296043 ZNF622Q969S3 477 aaKnown RBP eCLIP13.46□□□□□ -0.26
SHROOM3-201ENST00000296043 TSG101Q99816 390 aa13.46□□□□□ -0.26
SHROOM3-201ENST00000296043 KCNK9Q9NPC2 374 aa13.46□□□□□ -0.26
SHROOM3-201ENST00000296043 BMP2KQ9NSY1 1161 aaPredicted RBP13.46□□□□□ -0.26
SHROOM3-201ENST00000296043 RASAL2Q9UJF2 1139 aa13.46□□□□□ -0.26
SHROOM3-201ENST00000296043 PPP1R12BO60237 982 aaPredicted RBP13.45□□□□□ -0.26
SHROOM3-201ENST00000296043 POTEJP0CG39 1038 aa13.45□□□□□ -0.26
SHROOM3-201ENST00000296043 WHAMMQ8TF30 809 aa13.45□□□□□ -0.26
SHROOM3-201ENST00000296043 GRIPAP1Q4V328 841 aa13.45□□□□□ -0.26
SHROOM3-201ENST00000296043 TBC1D32Q96NH3 1257 aa13.45□□□□□ -0.26
SHROOM3-201ENST00000296043 PRDM2Q13029 1718 aa13.45□□□□□ -0.26
SHROOM3-201ENST00000296043 LZTFL1Q9NQ48 299 aa13.45□□□□□ -0.26
SHROOM3-201ENST00000296043 CTNNA2P26232 953 aa13.45□□□□□ -0.26
SHROOM3-201ENST00000296043 CUX2O14529 1486 aa13.45□□□□□ -0.26
SHROOM3-201ENST00000296043 ERO1AQ96HE7 468 aa13.45□□□□□ -0.26
SHROOM3-201ENST00000296043 AOPEPQ8N6M6 819 aa13.45□□□□□ -0.26
SHROOM3-201ENST00000296043 LIG3P49916 1009 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms