RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 BICRALQ6AI39 1079 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 PLET1Q6UQ28 207 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 HSDL2Q6YN16 418 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 HTR3DQ70Z44 454 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 RTN4RL1Q86UN2 441 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 METTL4Q8N3J2 472 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 ASCC1Q8N9N2 400 aaKnown RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 TEX47Q8TBZ9 253 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 SETD7Q8WTS6 366 aaKnown RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 RFKQ969G6 155 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 KIAA1143Q96AT1 154 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 OTULINQ96BN8 352 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 IGSF21Q96ID5 467 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 KCTD7Q96MP8 289 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 SIGLEC11Q96RL6 698 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 PHOX2BQ99453 314 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 COQ7Q99807 217 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 AIF1LQ9BQI0 150 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 POLR2J2Q9GZM3 115 aaKnown RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 POLR2J3Q9H1A7 115 aaKnown RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 LTB4R2Q9NPC1 389 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 PLSCR2Q9NRY7 297 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 SEMA3GQ9NS98 782 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 ING3Q9NXR8 418 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 KLHL28Q9NXS3 571 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 NDUFAF4Q9P032 175 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 H2AFY2Q9P0M6 372 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 STOX2Q9P2F5 926 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 TBC1D14Q9P2M4 693 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 EXOSC1Q9Y3B2 195 aaKnown RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 PPIL1Q9Y3C6 166 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 ZDBF2Q9HCK1 2354 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 C2orf78A6NCI8 922 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 HMX3A6NHT5 357 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 GABRR3A8MPY1 467 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 K7ERQ8 282 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 PDPK1O15530 556 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 GPR39O43194 453 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 PSIP1O75475 530 aaKnown RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 SLCO2B1O94956 709 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 SCG5P05408 212 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 HMGA1P17096 107 aaKnown RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 EPORP19235 508 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 IDSP22304 550 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 DDX6P26196 483 aaKnown RBP eCLIP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 GABRR2P28476 465 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 GTF2E2P29084 291 aaKnown RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 PTPN6P29350 595 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 PBLDP30039 288 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 TALDO1P37837 337 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 DGKGP49619 791 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 MANFP55145 182 aaKnown RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 RAB33AQ14088 237 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 SPHARQ15513 63 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 PYDC2Q56P42 97 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 CDC73Q6P1J9 531 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 DSG4Q86SJ6 1040 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 TSPAN33Q86UF1 283 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 KLHDC8AQ8IYD2 350 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 TCEAL8Q8IYN2 117 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 NAGSQ8N159 534 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 FBXO15Q8NCQ5 510 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 B3GNT7Q8NFL0 401 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 OR7G3Q8NG95 312 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 GOT1L1Q8NHS2 421 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 HUS1BQ8NHY5 278 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 SLC5A11Q8WWX8 675 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 UFD1Q92890 307 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 MARVELD3Q96A59 401 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 CLDN23Q96B33 292 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 ZBED6CLQ96FA7 236 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 C7orf34Q96L11 122 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 P2RY13Q9BPV8 354 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 KCNS3Q9BQ31 491 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 SLA2Q9H6Q3 261 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 AMBNQ9NP70 447 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 SACM1LQ9NTJ5 587 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 FKBP14Q9NWM8 211 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 NFKBIL1Q9UBC1 381 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 SEC14L3Q9UDX4 400 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 TEKT2Q9UIF3 430 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 HS3ST2Q9Y278 367 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 OR51B4Q9Y5P0 310 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 INSL5Q9Y5Q6 135 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 R4GN57 208 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 NCOR1O75376 2440 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 SPEGQ15772 3267 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 LOC105371267A0A1B0GV96 52 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 FABP12A6NFH5 140 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 TMEM229AB2RXF0 380 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 E7EQ34 232 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 GAPDHSO14556 408 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SLC28A2O43868 658 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 HCN1O60741 890 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 RNGTTO60942 597 aaKnown RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SEMA3DO95025 777 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 IL1AP01583 271 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 OPN1SWP03999 348 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ELFN1P0C7U0 828 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms