RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 GPX4P36969 197 aaPredicted RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 GPR143P51810 404 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 XKP51811 444 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 NR0B1P51843 470 aaKnown RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 SLC6A3Q01959 620 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 SOX4Q06945 474 aaPredicted RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 C1DQ13901 141 aaKnown RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 NTRK2Q16620 822 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 C6orf136Q5SQH8 315 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 HECTD2Q5U5R9 776 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 PLAG1Q6DJT9 500 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 PDZD4Q76G19 769 aaPredicted RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 GPR142Q7Z601 462 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 ISCA2Q86U28 154 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 CIR1Q86X95 450 aaPredicted RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 OXR1Q8N573 874 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 EIF4E3Q8N5X7 224 aaKnown RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 FBXO15Q8NCQ5 510 aaPredicted RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 C2CD4AQ8NCU7 369 aaPredicted RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 TMEM203Q969S6 136 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 C11orf24Q96F05 449 aaPredicted RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 KCTD7Q96MP8 289 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 KCNJ15Q99712 375 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 CHIAQ9BZP6 476 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 METTL17Q9H7H0 456 aaPredicted RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 PDLIM7Q9NR12 457 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 TMEM45AQ9NWC5 275 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 CLN6Q9NWW5 311 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 GRHPRQ9UBQ7 328 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 MRTO4Q9UKD2 239 aaKnown RBP7.56□□□□□ -1.2
VPS11-209ENST00000622309 UBIAD1Q9Y5Z9 338 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 AP1M2Q9Y6Q5 423 aa7.56□□□□□ -1.2
VPS11-209ENST00000622309 TERTO14746 1132 aaKnown RBP7.55□□□□□ -1.2
VPS11-209ENST00000622309 RP2O75695 350 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 DGAT1O75907 488 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 GABRB1P18505 474 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 JAK3P52333 1124 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 RAB5BP61020 215 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 TMEM132BQ14DG7 1078 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 RNF212Q495C1 297 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 USP39Q53GS9 565 aaKnown RBP7.55□□□□□ -1.2
VPS11-209ENST00000622309 RPS26P11Q5JNZ5 115 aaPredicted RBP7.55□□□□□ -1.2
VPS11-209ENST00000622309 NOMO2Q5JPE7 1267 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 LIPKQ5VXJ0 399 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 OR7E24Q6IFN5 339 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 TMEM17Q86X19 198 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 KLHL36Q8N4N3 616 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 TMIEQ8NEW7 156 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 LURAP1Q96LR2 239 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 ASB16Q96NS5 453 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 GABARAPL3Q9BY60 117 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 IKZF5Q9H5V7 419 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 GLOD4Q9HC38 313 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 TXNL4BQ9NX01 149 aaKnown RBP7.55□□□□□ -1.2
VPS11-209ENST00000622309 TAS2R3Q9NYW6 316 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 SH3BP4Q9P0V3 963 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 SEC14L3Q9UDX4 400 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 PCDHA10Q9Y5I2 948 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 COL2A1P02458 1487 aaPredicted RBP7.55□□□□□ -1.2
VPS11-209ENST00000622309 ADAMDEC1O15204 470 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 CASC3O15234 703 aaKnown RBP7.55□□□□□ -1.2
VPS11-209ENST00000622309 TXNL1O43396 289 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 LY86O95711 162 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 MT-CYBP00156 380 aaPredicted RBP7.55□□□□□ -1.2
VPS11-209ENST00000622309 PRR35P0CG20 571 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 G6PDP11413 515 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 TNFSF9P41273 254 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 PTGFRP43088 359 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 NFKB2Q00653 900 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 PON3Q15166 354 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 RBBP7Q16576 425 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 EIF2S3LQ2VIR3 472 aaKnown RBP7.55□□□□□ -1.2
VPS11-209ENST00000622309 SUPT20HL1Q3ZLR7 823 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 OR2B11Q5JQS5 317 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 ANKS6Q68DC2 871 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 KCTD11Q693B1 232 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 C3orf33Q6P1S2 294 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 WDR73Q6P4I2 378 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 FAHD1Q6P587 224 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 FBXO46Q6PJ61 603 aaPredicted RBP7.55□□□□□ -1.2
VPS11-209ENST00000622309 TRPV1Q8NER1 839 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 BEST4Q8NFU0 473 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 RNASE11Q8TAA1 199 aaKnown RBP7.55□□□□□ -1.2
VPS11-209ENST00000622309 PHOSPHO1Q8TCT1 267 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 NUDT8Q8WV74 236 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 DDOQ99489 341 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 SSX3Q99909 188 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 ELOVL4Q9GZR5 314 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 LMAN2LQ9H0V9 348 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 GBA2Q9HCG7 927 aaPredicted RBP7.55□□□□□ -1.2
VPS11-209ENST00000622309 RNF186Q9NXI6 227 aa7.55□□□□□ -1.2
VPS11-209ENST00000622309 ANKDD1BA6NHY2 528 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 SUPT3HB4E1H0 165 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 PRR23D1E9PI22 279 aaPredicted RBP7.54□□□□□ -1.2
VPS11-209ENST00000622309 M0R129 80 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 M0R3H8 397 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 POMCP01189 267 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 PRR23D2P0DMB1 279 aaPredicted RBP7.54□□□□□ -1.2
VPS11-209ENST00000622309 UROSP10746 265 aa7.54□□□□□ -1.2
VPS11-209ENST00000622309 PTBP1P26599 531 aaKnown RBP eCLIP7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms