RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 OR4E2Q8NGC2 313 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 UBTD2Q8WUN7 234 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 SNAPC3Q92966 411 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 TSACCQ96A04 125 aaPredicted RBP13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 MED30Q96HR3 178 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 REEP1Q9H902 201 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 RIF1Q5UIP0 2472 aaKnown RBP13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 SMIM30A4D0T7 59 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 SCAMP2O15127 329 aaKnown RBP13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 STSP08842 583 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 IDSP22304 550 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 CBLP22681 906 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 ITGB7P26010 798 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 TIA1P31483 386 aaKnown RBP eCLIP13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 MAPK12P53778 367 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 SRSF11Q05519 484 aaKnown RBP13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 PRSS53Q2L4Q9 553 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 COQ10AQ96MF6 247 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 BCL7BQ9BQE9 202 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 SLC6A16Q9GZN6 736 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 GPR83Q9NYM4 423 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 STMN3Q9NZ72 180 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 A0A1W2PRB8 838 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 RPLP0P05388 317 aaKnown RBP13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 FABP3P05413 133 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 DDX5P17844 614 aaKnown RBP13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 TGM4P49221 684 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 ARMCX4Q5H9R4 360 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 CPZQ66K79 652 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 LINC00299Q6ZSB3 139 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 CCL4L1Q8NHW4 92 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 FAM83CQ9BQN1 747 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 PCDHGB1Q9Y5G3 927 aa13.76□□□□□ -0.21
SHROOM1-208ENST00000617339 MEIOCA2RUB1 952 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 AP2A2O94973 939 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 SRPRAP08240 638 aaKnown RBP13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 CHRM5P08912 532 aaPredicted RBP13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 CDK3Q00526 305 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 KRR1Q13601 381 aaKnown RBP13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 MED22Q15528 200 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 RFX4Q33E94 735 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 PAMR1Q6UXH9 720 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 BPHLQ86WA6 291 aaPredicted RBP13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 ETFBKMTQ8IXQ9 262 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 TMEFF1Q8IYR6 380 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 CYP4Z2PQ8N1L4 340 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 STX19Q8N4C7 294 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 ZNF614Q8N883 585 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 PIK3R3Q92569 461 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 GAS2L1Q99501 681 aaPredicted RBP13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 SMLR1H3BR10 107 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 KIAA0513O60268 411 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 LCMT2O60294 686 aaKnown RBP13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 ACVR2AP27037 513 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 TUBA1BP68363 451 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 SPIBQ01892 262 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 DBPQ10586 325 aaPredicted RBP13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 OR2T5Q6IEZ7 315 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 GRHL2Q6ISB3 625 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 NXPE4Q6UWF7 544 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 TUBA1AQ71U36 451 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 LRRTM4Q86VH4 590 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 CCDC71Q8IV32 467 aaPredicted RBP13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 SFTPA2Q8IWL1 248 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 KBTBD8Q8NFY9 601 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 OR2T29Q8NH02 315 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 PRR14Q9BWN1 585 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 HCN2Q9UL51 889 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 TBC1D24Q9ULP9 559 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 CA14Q9ULX7 337 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 MAFFQ9ULX9 164 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 ALPK2Q86TB3 2170 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 A0A0X1KG70 313 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 CLDN24A6NM45 220 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 C5orf58C9J3I9 102 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 TMCC2O75069 709 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 NPPAP01160 153 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 SP140Q13342 867 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 TJAP1Q5JTD0 557 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 OR5D16Q8NGK9 328 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 C16orf78Q8WTQ4 265 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 TRIM63Q969Q1 353 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 ZNF576Q9H609 170 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 GORASP2Q9H8Y8 452 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 KCNK12Q9HB15 430 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 TMEM184CQ9NVA4 438 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 AHCTF1Q8WYP5 2266 aa13.75□□□□□ -0.21
SHROOM1-208ENST00000617339 GPR179Q6PRD1 2367 aa13.74□□□□□ -0.21
SHROOM1-208ENST00000617339 POM121BA6NF01 834 aa13.74□□□□□ -0.21
SHROOM1-208ENST00000617339 PRAMEF10O60809 474 aa13.74□□□□□ -0.21
SHROOM1-208ENST00000617339 PTPN6P29350 595 aa13.74□□□□□ -0.21
SHROOM1-208ENST00000617339 FEN1P39748 380 aaKnown RBP13.74□□□□□ -0.21
SHROOM1-208ENST00000617339 MXD1Q05195 221 aa13.74□□□□□ -0.21
SHROOM1-208ENST00000617339 RGNQ15493 299 aa13.74□□□□□ -0.21
SHROOM1-208ENST00000617339 NOXA1Q86UR1 476 aa13.74□□□□□ -0.21
SHROOM1-208ENST00000617339 ZNF675Q8TD23 568 aa13.74□□□□□ -0.21
SHROOM1-208ENST00000617339 RAD18Q9NS91 495 aa13.74□□□□□ -0.21
SHROOM1-208ENST00000617339 RLIMQ9NVW2 624 aa13.74□□□□□ -0.21
SHROOM1-208ENST00000617339 THUMPD1Q9NXG2 353 aaKnown RBP13.74□□□□□ -0.21
SHROOM1-208ENST00000617339 MUTYHQ9UIF7 546 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms