RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 RBM18Q96H35 190 aaKnown RBP17.33■□□□□ 0.36
PNKP-213ENST00000599543 ART5Q96L15 291 aa17.33■□□□□ 0.36
PNKP-213ENST00000599543 ZIM3Q96PE6 472 aa17.33■□□□□ 0.36
PNKP-213ENST00000599543 CDK15Q96Q40 435 aa17.33■□□□□ 0.36
PNKP-213ENST00000599543 MTERF1Q99551 399 aaKnown RBP17.33■□□□□ 0.36
PNKP-213ENST00000599543 SPOCK3Q9BQ16 436 aa17.33■□□□□ 0.36
PNKP-213ENST00000599543 ZDHHC11Q9H8X9 412 aa17.33■□□□□ 0.36
PNKP-213ENST00000599543 SACM1LQ9NTJ5 587 aa17.33■□□□□ 0.36
PNKP-213ENST00000599543 LGALS13Q9UHV8 139 aa17.33■□□□□ 0.36
PNKP-213ENST00000599543 PCDHGA11Q9Y5H2 935 aa17.33■□□□□ 0.36
PNKP-213ENST00000599543 F8P00451 2351 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 PLPP1O14494 284 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 COPEO14579 308 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 GLRA3O75311 464 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 P04436 131 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 CREB1P16220 341 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 CNR1P21554 472 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 ARL1P40616 181 aaPredicted RBP17.32■□□□□ 0.36
PNKP-213ENST00000599543 BUD31P41223 144 aaPredicted RBP17.32■□□□□ 0.36
PNKP-213ENST00000599543 PIK3CGP48736 1102 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 TNFRSF17Q02223 184 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 FOLH1Q04609 750 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 BIKQ13323 160 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 RASA2Q15283 850 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 MPEG1Q2M385 716 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 LIPJQ5W064 366 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 GPR180Q86V85 440 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 ZCCHC7Q8N3Z6 543 aaKnown RBP17.32■□□□□ 0.36
PNKP-213ENST00000599543 FAM109AQ8N4B1 249 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 NUBPLQ8TB37 319 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 ASB5Q8WWX0 329 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 RND1Q92730 232 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 TANKQ92844 425 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 SENP5Q96HI0 755 aaPredicted RBP17.32■□□□□ 0.36
PNKP-213ENST00000599543 CENPHQ9H3R5 247 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 IPPKQ9H8X2 491 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 IL1RL2Q9HB29 575 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 PCTPQ9UKL6 214 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 TSC22D4Q9Y3Q8 395 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 HRH3Q9Y5N1 445 aa17.32■□□□□ 0.36
PNKP-213ENST00000599543 NPIPA2E9PIF3 369 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 NPIPA3F8WFD2 350 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 PPP6CO00743 305 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 OR7A17O14581 309 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 UGDHO60701 494 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 ZNF354AO60765 605 aaPredicted RBP17.31■□□□□ 0.36
PNKP-213ENST00000599543 GLSO94925 669 aaPredicted RBP17.31■□□□□ 0.36
PNKP-213ENST00000599543 PROCP04070 461 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 TUBBP07437 444 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 GSTA1P08263 222 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 CHRNB4P30926 498 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 NR0B1P51843 470 aaKnown RBP17.31■□□□□ 0.36
PNKP-213ENST00000599543 ARFIP1P53367 373 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 CDH13P55290 713 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 RPS13P62277 151 aaKnown RBP17.31■□□□□ 0.36
PNKP-213ENST00000599543 ASPHQ12797 758 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 C18orf63Q68DL7 685 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 MEX3BQ6ZN04 569 aaKnown RBP17.31■□□□□ 0.36
PNKP-213ENST00000599543 TRABD2AQ86V40 505 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 OR52B6Q8NGF0 335 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 OR5M3Q8NGP4 307 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 SLC22A8Q8TCC7 542 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 PPWD1Q96BP3 646 aaKnown RBP17.31■□□□□ 0.36
PNKP-213ENST00000599543 SMC6Q96SB8 1091 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 ROPN1BQ9BZX4 212 aaPredicted RBP17.31■□□□□ 0.36
PNKP-213ENST00000599543 ENKD1Q9H0I2 346 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 NOL11Q9H8H0 719 aaKnown RBP17.31■□□□□ 0.36
PNKP-213ENST00000599543 ROPN1Q9HAT0 212 aaPredicted RBP17.31■□□□□ 0.36
PNKP-213ENST00000599543 ZBTB26Q9HCK0 441 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 SEMA4BQ9NPR2 832 aaPredicted RBP17.31■□□□□ 0.36
PNKP-213ENST00000599543 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.31■□□□□ 0.36
PNKP-213ENST00000599543 DCDC2Q9UHG0 476 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 RNF11Q9Y3C5 154 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 ATG4BQ9Y4P1 393 aa17.31■□□□□ 0.36
PNKP-213ENST00000599543 AKAP9Q99996 3911 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 NINQ8N4C6 2090 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 A0A1B0GTL3 188 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 OR14I1A6ND48 311 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 H0YIV9 168 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 STX16-NPEPL1H3BU86 382 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 STX16O14662 325 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 IGKV3-11P04433 115 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 CCL3P10147 92 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 ALOX15P16050 662 aaPredicted RBP17.3■□□□□ 0.36
PNKP-213ENST00000599543 TAC1P20366 129 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 PTX3P26022 381 aaPredicted RBP17.3■□□□□ 0.36
PNKP-213ENST00000599543 MAGEA5P43359 124 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 DNASE1L1P49184 302 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 HNRNPH2P55795 449 aaKnown RBP17.3■□□□□ 0.36
PNKP-213ENST00000599543 CPSF6Q16630 551 aaKnown RBP eCLIP17.3■□□□□ 0.36
PNKP-213ENST00000599543 PIGGQ5H8A4 983 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 EMC4Q5J8M3 183 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 CEP85LQ5SZL2 805 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 CYP20A1Q6UW02 462 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 ACAD11Q709F0 780 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 C9orf40Q8IXQ3 194 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 ST13P4Q8IZP2 240 aaPredicted RBP17.3■□□□□ 0.36
PNKP-213ENST00000599543 RIBC1Q8N443 379 aaPredicted RBP17.3■□□□□ 0.36
PNKP-213ENST00000599543 RPRMLQ8N4K4 120 aa17.3■□□□□ 0.36
PNKP-213ENST00000599543 TMEM251Q8N6I4 163 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms