RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 HS6ST1O60243 411 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 CDC40O60508 579 aaKnown RBP eCLIP11.46□□□□□ -0.57
SS18-225ENST00000585121 GLRA3O75311 464 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 ULK1O75385 1050 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 WISP2O76076 250 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 IGKV3-11P04433 115 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 HSD3B1P14060 373 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 KRT15P19012 456 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 CNR1P21554 472 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 HSD3B2P26439 372 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 RFC3P40938 356 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 CCT5P48643 541 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 SMSP52788 366 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 NAA20P61599 178 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 PPIAP62937 165 aaKnown RBP11.46□□□□□ -0.57
SS18-225ENST00000585121 TBL3Q12788 808 aaKnown RBP11.46□□□□□ -0.57
SS18-225ENST00000585121 ZNF750Q32MQ0 723 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 UNC50Q53HI1 259 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 RNFT1Q5M7Z0 435 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 NDUFAF5Q5TEU4 345 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 HLA-DQA1Q5Y7H0 255 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 Q6ZPB1 254 aaPredicted RBP11.46□□□□□ -0.57
SS18-225ENST00000585121 GK5Q6ZS86 529 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 COMMD6Q7Z4G1 85 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 SLC22A16Q86VW1 577 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 DND1Q8IYX4 353 aaKnown RBP11.46□□□□□ -0.57
SS18-225ENST00000585121 TAGAPQ8N103 731 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 CDYL2Q8N8U2 506 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 OR2M7Q8NG81 312 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 METTL6Q8TCB7 284 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 CCDC120Q96HB5 630 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 TMEM237Q96Q45 408 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 GAL3ST4Q96RP7 486 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 FAM173AQ9BQD7 235 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 FAIM2Q9BWQ8 316 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 SACM1LQ9NTJ5 587 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 ARGLU1Q9NWB6 273 aaPredicted RBP11.46□□□□□ -0.57
SS18-225ENST00000585121 TEX10Q9NXF1 929 aaPredicted RBP11.46□□□□□ -0.57
SS18-225ENST00000585121 VPS29Q9UBQ0 182 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 TINAGQ9UJW2 476 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 UNC79Q9P2D8 2635 aa11.46□□□□□ -0.57
SS18-225ENST00000585121 MYO7BQ6PIF6 2116 aa11.46□□□□□ -0.58
SS18-225ENST00000585121 C1orf226A1L170 272 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 GOLGA6L10A6NI86 522 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 WASHC1A8K0Z3 465 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 CAPN14A8MX76 684 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 MANBAO00462 879 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 PGRMC2O15173 223 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 ENO1P06733 434 aaKnown RBP11.45□□□□□ -0.58
SS18-225ENST00000585121 MYL2P10916 166 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 PORP16435 677 aaPredicted RBP11.45□□□□□ -0.58
SS18-225ENST00000585121 COL8A1P27658 744 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 TNFRSF8P28908 595 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 PTGS2P35354 604 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 XKP51811 444 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 PKNOX1P55347 436 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 CSTF3Q12996 717 aaKnown RBP11.45□□□□□ -0.58
SS18-225ENST00000585121 LCP2Q13094 533 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 DGAT2L6Q6ZPD8 337 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 FAM47EQ6ZV65 393 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 MRGPRGQ86SM5 289 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 GALNT12Q8IXK2 581 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 C9orf40Q8IXQ3 194 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 SLC34A3Q8N130 599 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 ZNF808Q8N4W9 903 aaPredicted RBP11.45□□□□□ -0.58
SS18-225ENST00000585121 CCNYL1Q8N7R7 359 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 GBP7Q8N8V2 638 aaPredicted RBP11.45□□□□□ -0.58
SS18-225ENST00000585121 L3HYPDHQ96EM0 354 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 EPB41L4BQ9H329 900 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 FARSBQ9NSD9 589 aaKnown RBP11.45□□□□□ -0.58
SS18-225ENST00000585121 GRID1Q9ULK0 1009 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 CENPEQ02224 2701 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 A0A1B0GTL3 188 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 SMIM23A6NLE4 172 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 PRSS44E7EML9 344 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 HRKO00198 91 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 ESRRBO95718 433 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 H2AFXP16104 143 aaPredicted RBP11.45□□□□□ -0.58
SS18-225ENST00000585121 NT5EP21589 574 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 SERPINB3P29508 390 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 PTGER1P34995 402 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 SLCO1A2P46721 670 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 SLC37A1P57057 533 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 TRA2BP62995 288 aaKnown RBP11.45□□□□□ -0.58
SS18-225ENST00000585121 HSF1Q00613 529 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 ART3Q13508 389 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 CCDC153Q494R4 210 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 CFAP157Q5JU67 520 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 SLC22A10Q63ZE4 541 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 ARHGAP11AQ6P4F7 1023 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 XKRXQ6PP77 449 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 TDRPQ86YL5 185 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 C1orf52Q8N6N3 182 aaKnown RBP11.45□□□□□ -0.58
SS18-225ENST00000585121 CCDC63Q8NA47 563 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 DOK4Q8TEW6 326 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 MZB1Q8WU39 189 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 WWTR1Q9GZV5 400 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 CXorf21Q9HAI6 301 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 ZNF225Q9UK10 706 aa11.45□□□□□ -0.58
SS18-225ENST00000585121 PCDHA9Q9Y5H5 950 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms