RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 CAPRIN1Q14444 709 aaKnown RBP14.34□□□□□ -0.11
SS18-215ENST00000580642 ZC3H7AQ8IWR0 971 aaKnown RBP14.34□□□□□ -0.11
SS18-215ENST00000580642 CCDC116Q8IYX3 515 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 OR52N2Q8NGI0 321 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 ADAMTS14Q8WXS8 1223 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 UCN3Q969E3 161 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 ASB9Q96DX5 294 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 NEURL3Q96EH8 262 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 ECSITQ9BQ95 431 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 SLC39A3Q9BRY0 314 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 THUMPD3Q9BV44 507 aaKnown RBP14.34□□□□□ -0.11
SS18-215ENST00000580642 APMAPQ9HDC9 416 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 CMTM6Q9NX76 183 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 C5AR2Q9P296 337 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 MAU2Q9Y6X3 613 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.34□□□□□ -0.11
SS18-215ENST00000580642 PCNX2A6NKB5 2137 aa14.33□□□□□ -0.11
SS18-215ENST00000580642 IGKV3D-11A0A0A0MRZ8 115 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 NME4O00746 187 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 EMC8O43402 210 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 HYAL3O43820 417 aaPredicted RBP14.33□□□□□ -0.12
SS18-215ENST00000580642 PLOD3O60568 738 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 GFRA3O60609 400 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 BCAS2O75934 225 aaPredicted RBP14.33□□□□□ -0.12
SS18-215ENST00000580642 GSNP06396 782 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 BMP2P12643 396 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 CD82P27701 267 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 HTR1EP28566 365 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 STT3AP46977 705 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 CCT3P49368 545 aaKnown RBP14.33□□□□□ -0.12
SS18-215ENST00000580642 MAP4K2Q12851 820 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 HSPB3Q12988 150 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 TRIM25Q14258 630 aaKnown RBP14.33□□□□□ -0.12
SS18-215ENST00000580642 PRAMEF17Q5VTA0 474 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 SAXO2Q658L1 398 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 ERICH5Q6P6B1 374 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 ZCCHC12Q6PEW1 402 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 IGF2-ASQ6U949 168 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 COX15Q7KZN9 410 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 ZNF551Q7Z340 670 aaPredicted RBP14.33□□□□□ -0.12
SS18-215ENST00000580642 GPR155Q7Z3F1 870 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 NET1Q7Z628 596 aaPredicted RBP14.33□□□□□ -0.12
SS18-215ENST00000580642 PTRH1Q86Y79 214 aaKnown RBP14.33□□□□□ -0.12
SS18-215ENST00000580642 SLC38A9Q8NBW4 561 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 TMEM52Q8NDY8 209 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 UTP4Q969X6 686 aaKnown RBP14.33□□□□□ -0.12
SS18-215ENST00000580642 ELP4Q96EB1 424 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 RBM18Q96H35 190 aaKnown RBP14.33□□□□□ -0.12
SS18-215ENST00000580642 PHOX2BQ99453 314 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 SLC35A5Q9BS91 424 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 ULBP3Q9BZM4 244 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 TRIM4Q9C037 500 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 ALG2Q9H553 416 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 EPS8L2Q9H6S3 715 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 CXorf36Q9H7Y0 433 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 SLC22A11Q9NSA0 550 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 SLC6A13Q9NSD5 602 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 SIRT3Q9NTG7 399 aaPredicted RBP14.33□□□□□ -0.12
SS18-215ENST00000580642 IFT80Q9P2H3 777 aaPredicted RBP14.33□□□□□ -0.12
SS18-215ENST00000580642 SLC7A8Q9UHI5 535 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 CDV3Q9UKY7 258 aaKnown RBP14.33□□□□□ -0.12
SS18-215ENST00000580642 ZNF451Q9Y4E5 1061 aa14.33□□□□□ -0.12
SS18-215ENST00000580642 RNF103-CHMP3A0A140T963 221 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 SPAARA0A1B0GVQ0 90 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 PRORSD1PA6NEY8 169 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 WASHC1A8K0Z3 465 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 C9J4A7 227 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 DYRK3O43781 588 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 OR10H2O60403 315 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 B4GALT2O60909 372 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 STAMBPO95630 424 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 NTRK1P04629 796 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 CHI3L1P36222 383 aaPredicted RBP14.32□□□□□ -0.12
SS18-215ENST00000580642 RHAGQ02094 409 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 LIPEQ05469 1076 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 RBBP4Q09028 425 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 GAB1Q13480 694 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 CEACAM7Q14002 265 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 SYT16Q17RD7 645 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 SPDYE7PQ495Y7 208 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 ZNF628Q5EBL2 1059 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 RABL3Q5HYI8 236 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 C1orf189Q5VU69 101 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 MRPL14Q6P1L8 145 aaKnown RBP14.32□□□□□ -0.12
SS18-215ENST00000580642 DNAJC14Q6Y2X3 702 aaPredicted RBP14.32□□□□□ -0.12
SS18-215ENST00000580642 CALHM3Q86XJ0 350 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 SLC30A8Q8IWU4 369 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 OR2L13Q8N349 312 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 METTL27Q8N6F8 245 aaPredicted RBP14.32□□□□□ -0.12
SS18-215ENST00000580642 METTL25Q8N6Q8 603 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 STT3BQ8TCJ2 826 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 MIPOL1Q8TD10 442 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 CTHRC1Q96CG8 243 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 REXO5Q96IC2 774 aaKnown RBP14.32□□□□□ -0.12
SS18-215ENST00000580642 DGAT2Q96PD7 388 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 CTRCQ99895 268 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 YIPF2Q9BWQ6 316 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 ALOXE3Q9BYJ1 711 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 SPRY4Q9C004 299 aa14.32□□□□□ -0.12
SS18-215ENST00000580642 RRP15Q9Y3B9 282 aaKnown RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms