RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 DPM3Q9P2X0 92 aa1.95□□□□□ -2.1
VPS35-207ENST00000568191 GPR132Q9UNW8 380 aa1.95□□□□□ -2.1
VPS35-207ENST00000568191 MOKQ9UQ07 419 aa1.95□□□□□ -2.1
VPS35-207ENST00000568191 IGHV3OR16-12A0A075B7B8 117 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 SLC15A5A6NIM6 579 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 WDR46O15213 610 aaKnown RBP1.94□□□□□ -2.1
VPS35-207ENST00000568191 MAGEB4O15481 346 aaPredicted RBP1.94□□□□□ -2.1
VPS35-207ENST00000568191 SYT7O43581 403 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 TSC22D2O75157 780 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 ANXA9O76027 345 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 GJB5O95377 273 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 IGLV1-47P01700 117 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 NR2C1P13056 603 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 ZNF17P17021 662 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 CCND3P30281 292 aaPredicted RBP1.94□□□□□ -2.1
VPS35-207ENST00000568191 OR1D2P34982 312 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 MFAP2P55001 183 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 TFCP2Q12800 502 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 LCP2Q13094 533 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 ASAH1Q13510 395 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 SLC10A1Q14973 349 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 ACKR1Q16570 336 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 PAGE2BQ5JRK9 111 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 CAPN13Q6MZZ7 669 aaPredicted RBP1.94□□□□□ -2.1
VPS35-207ENST00000568191 ERICH1Q86X53 443 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 VSIG1Q86XK7 387 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 SIX6OS1Q8N1H7 587 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 CADM2Q8N3J6 435 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 C14orf178Q8N769 122 aaPredicted RBP1.94□□□□□ -2.1
VPS35-207ENST00000568191 NHLRC2Q8NBF2 726 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 RELL2Q8NC24 303 aaPredicted RBP1.94□□□□□ -2.1
VPS35-207ENST00000568191 CCDC197Q8NCU1 140 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 ZNF671Q8TAW3 534 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 DNASE1L2Q92874 299 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 MRPL24Q96A35 216 aaKnown RBP1.94□□□□□ -2.1
VPS35-207ENST00000568191 ELSPBP1Q96BH3 223 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 ERO1AQ96HE7 468 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 RAB40CQ96S21 281 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 SPAG8Q99932 426 aaPredicted RBP1.94□□□□□ -2.1
VPS35-207ENST00000568191 TTYH2Q9BSA4 534 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 CXXC4Q9H2H0 198 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 TAS2R16Q9NYV7 291 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 KLRF1Q9NZS2 232 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 MLXQ9UH92 298 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 TEKT2Q9UIF3 430 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 PSORS1C1Q9UIG5 152 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 ERVK-19Q9WJR5 959 aa1.94□□□□□ -2.1
VPS35-207ENST00000568191 A0A0A6YYC8 382 aaPredicted RBP1.93□□□□□ -2.1
VPS35-207ENST00000568191 IGHV3-35A0A0C4DH35 117 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 SH3PXD2BA1X283 911 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 PINLYPA6NC86 204 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 ZFP92A6NM28 416 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 YDJCA8MPS7 323 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 A8MX80 341 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 I3L1I5 382 aaPredicted RBP1.93□□□□□ -2.1
VPS35-207ENST00000568191 DUSP14O95147 198 aaKnown RBP1.93□□□□□ -2.1
VPS35-207ENST00000568191 STBD1O95210 358 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 GLULP15104 373 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 ACP1P24666 158 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 TRPC1P48995 793 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 RPL27P61353 136 aaKnown RBP1.93□□□□□ -2.1
VPS35-207ENST00000568191 CDKL1Q00532 357 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 SLC34A1Q06495 639 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 QRICH1Q2TAL8 776 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 IGFL2Q6UWQ7 119 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 APOOLQ6UXV4 268 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 OTOAQ7RTW8 1153 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 METTL23Q86XA0 190 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 KLHL7Q8IXQ5 586 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 ENTHD1Q8IYW4 607 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 ZNF491Q8N8L2 437 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 Q8N9G6 341 aaPredicted RBP1.93□□□□□ -2.1
VPS35-207ENST00000568191 AFAP1L1Q8TED9 768 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 RNF138Q8WVD3 245 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 ULK4Q96C45 1275 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 IMMP1LQ96LU5 166 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 RASL10BQ96S79 203 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 PARK7Q99497 189 aaKnown RBP1.93□□□□□ -2.1
VPS35-207ENST00000568191 C19orf43Q9BQ61 176 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 THUMPD3Q9BV44 507 aaKnown RBP1.93□□□□□ -2.1
VPS35-207ENST00000568191 IL1RL2Q9HB29 575 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 PLSCR3Q9NRY6 295 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 SLCO1C1Q9NYB5 712 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 SEPT10Q9P0V9 454 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 VPS18Q9P253 973 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 ITM2BQ9Y287 266 aa1.93□□□□□ -2.1
VPS35-207ENST00000568191 ACEP12821 1306 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 MAGEB16A2A368 324 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 A4D1N5 150 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 SLU7O95391 586 aaKnown RBP1.92□□□□□ -2.1
VPS35-207ENST00000568191 CCDC159P0C7I6 412 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 SLC35E2P0CK97 266 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 MBL2P11226 248 aaPredicted RBP1.92□□□□□ -2.1
VPS35-207ENST00000568191 PSMB1P20618 241 aaKnown RBP1.92□□□□□ -2.1
VPS35-207ENST00000568191 GABPAQ06546 454 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 SCN1BQ07699 218 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 PTK6Q13882 451 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 SERTAD2Q14140 314 aa1.92□□□□□ -2.1
VPS35-207ENST00000568191 PAN3Q58A45 887 aaKnown RBP1.92□□□□□ -2.1
VPS35-207ENST00000568191 NHSL2Q5HYW2 709 aa1.92□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms