RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 TRBV11-1A0A0K0K1C0 115 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 OR6C76A6NM76 312 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 K7EM74 188 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 FCHO1O14526 889 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 ERAL1O75616 437 aaKnown RBP12.11□□□□□ -0.47
NEDD8-208ENST00000560427 DDAH2O95865 285 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 IGKV3-11P04433 115 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 PRPS2P11908 318 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 SDC1P18827 310 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 NR1D1P20393 614 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 TLR1Q15399 786 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 PDCD2Q16342 344 aaPredicted RBP12.11□□□□□ -0.47
NEDD8-208ENST00000560427 GALNTL6Q49A17 601 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 C6orf136Q5SQH8 315 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 RPS19BP1Q86WX3 136 aaKnown RBP12.11□□□□□ -0.47
NEDD8-208ENST00000560427 ZNF843Q8N446 348 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 FNDC5Q8NAU1 212 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 NUBPLQ8TB37 319 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 ZNF675Q8TD23 568 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 LRRC8CQ8TDW0 803 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 ZNF721Q8TF20 911 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 DYDC1Q8WWB3 177 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 ZNF75CPQ92670 426 aaPredicted RBP12.11□□□□□ -0.47
NEDD8-208ENST00000560427 HAS2Q92819 552 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 ERP27Q96DN0 273 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 MTERF3Q96E29 417 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 SENP5Q96HI0 755 aaPredicted RBP12.11□□□□□ -0.47
NEDD8-208ENST00000560427 C7orf26Q96N11 449 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 ZNF681Q96N22 645 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 OR8D2Q9GZM6 311 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 CXorf21Q9HAI6 301 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 SLC35C2Q9NQQ7 365 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 ASIC5Q9NY37 505 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 B3GNT3Q9Y2A9 372 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 HEMK1Q9Y5R4 338 aaPredicted RBP12.11□□□□□ -0.47
NEDD8-208ENST00000560427 NBEAQ8NFP9 2946 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 ATMQ13315 3056 aa12.11□□□□□ -0.47
NEDD8-208ENST00000560427 ATP6AP2A0A1C7CYW4 349 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 TRPC5OSA6NMA1 111 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 A8MUI8 341 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 B8ZZF3 427 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 HDAC3O15379 428 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 TBX19O60806 448 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 PEX11AO75192 247 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 ATP6AP2O75787 350 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 C1QL1O75973 258 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 BCKDHAP12694 445 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 HPCAL1P37235 193 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 CASRP41180 1078 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 MLF1P58340 268 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 ERVK-8P63133 956 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 ARG2P78540 354 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 EMX2Q04743 252 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 C2orf80Q0P641 193 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 C19orf57Q0VDD7 668 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 B3GNTL1Q67FW5 361 aaPredicted RBP12.1□□□□□ -0.47
NEDD8-208ENST00000560427 LINC00696Q6ZRV3 163 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 Q6ZS92 163 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 R3HCC1LQ7Z5L2 792 aaKnown RBP12.1□□□□□ -0.47
NEDD8-208ENST00000560427 TICAM1Q8IUC6 712 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 CRLF3Q8IUI8 442 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 FAM9CQ8IZT9 166 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 MMP21Q8N119 569 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 KIF2BQ8N4N8 673 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 ARFGAP2Q8N6H7 521 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 RBMXL3Q8N7X1 1067 aaKnown RBP12.1□□□□□ -0.47
NEDD8-208ENST00000560427 OR7G1Q8NGA0 311 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 CDC26Q8NHZ8 85 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 PIWIL2Q8TC59 973 aaKnown RBP12.1□□□□□ -0.47
NEDD8-208ENST00000560427 UCN3Q969E3 161 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 CNRIP1Q96F85 164 aaPredicted RBP12.1□□□□□ -0.47
NEDD8-208ENST00000560427 C3orf30Q96M34 536 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 MEAF6Q9HAF1 191 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 STMN3Q9NZ72 180 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 NOP53Q9NZM5 478 aaKnown RBP12.1□□□□□ -0.47
NEDD8-208ENST00000560427 ZNF223Q9UK11 482 aaPredicted RBP12.1□□□□□ -0.47
NEDD8-208ENST00000560427 RALYQ9UKM9 306 aaKnown RBP12.1□□□□□ -0.47
NEDD8-208ENST00000560427 MAPRE3Q9UPY8 281 aa12.1□□□□□ -0.47
NEDD8-208ENST00000560427 EIF3LQ9Y262 564 aaKnown RBP12.1□□□□□ -0.47
NEDD8-208ENST00000560427 COL6A6A6NMZ7 2263 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 TRAV17A0A0B4J275 112 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 OR5H15A6NDH6 313 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 WASHC1A8K0Z3 465 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 JUNP05412 331 aaKnown RBP12.09□□□□□ -0.47
NEDD8-208ENST00000560427 IFI6P09912 130 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 NT5EP21589 574 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 TACR1P25103 407 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 NTSP30990 170 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 MPIP34949 423 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 TRHRP34981 398 aaPredicted RBP12.09□□□□□ -0.47
NEDD8-208ENST00000560427 FUT7Q11130 342 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 MAP4K2Q12851 820 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 PDE7AQ13946 482 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 PRICKLE4Q2TBC4 344 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 SLC6A19Q695T7 634 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 OGFOD2Q6N063 350 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 RNF111Q6ZNA4 994 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 RGS9BPQ6ZS82 235 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 GPALPP1Q8IXQ4 340 aa12.09□□□□□ -0.47
NEDD8-208ENST00000560427 BEST3Q8N1M1 668 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms