RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 TMEM19Q96HH6 336 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 WRAP53Q9BUR4 548 aaKnown RBP10.78□□□□□ -0.68
LDLR-208ENST00000558518 KATNB1Q9BVA0 655 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 NXF2Q9GZY0 626 aaKnown RBP10.78□□□□□ -0.68
LDLR-208ENST00000558518 CAPN10Q9HC96 672 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 POM121CA8CG34 1229 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 ZNF623O75123 536 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 PAHP00439 452 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 LHCGRP22888 699 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 SLC9A3P48764 834 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 GZMKP49863 264 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 KLHL12Q53G59 568 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 ACSM5Q6NUN0 579 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 BHLHB9Q6PI77 547 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 CEP76Q8TAP6 659 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 SMAP2Q8WU79 429 aaPredicted RBP10.78□□□□□ -0.68
LDLR-208ENST00000558518 KLK6Q92876 244 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 UPF1Q92900 1129 aaKnown RBP eCLIP10.78□□□□□ -0.688e-9■■■■■ 36.5
LDLR-208ENST00000558518 DCLRE1CQ96SD1 692 aaKnown RBP10.78□□□□□ -0.68
LDLR-208ENST00000558518 SLC12A9Q9BXP2 914 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 ABCG5Q9H222 651 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 C3orf14Q9HBI5 128 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 B3GAT2Q9NPZ5 323 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 ASAH2Q9NR71 780 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 A3GALT2U3KPV4 340 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 ANHXE9PGG2 379 aa10.77□□□□□ -0.68
LDLR-208ENST00000558518 TP53P04637 393 aaPredicted RBP10.77□□□□□ -0.68
LDLR-208ENST00000558518 EPHX1P07099 455 aa10.77□□□□□ -0.68
LDLR-208ENST00000558518 TIA1P31483 386 aaKnown RBP eCLIP10.77□□□□□ -0.681e-7■□□□□ 9.9
LDLR-208ENST00000558518 RFX3P48380 749 aa10.77□□□□□ -0.68
LDLR-208ENST00000558518 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.77□□□□□ -0.685e-6■□□□□ 10.9
LDLR-208ENST00000558518 SLC24A5Q71RS6 500 aa10.77□□□□□ -0.68
LDLR-208ENST00000558518 CHST14Q8NCH0 376 aa10.77□□□□□ -0.68
LDLR-208ENST00000558518 OR4M2Q8NGB6 313 aa10.77□□□□□ -0.68
LDLR-208ENST00000558518 SETD6Q8TBK2 473 aa10.77□□□□□ -0.68
LDLR-208ENST00000558518 ASZ1Q8WWH4 475 aa10.77□□□□□ -0.68
LDLR-208ENST00000558518 RIPOR3Q96MK2 946 aa10.77□□□□□ -0.68
LDLR-208ENST00000558518 MACROD1Q9BQ69 325 aa10.77□□□□□ -0.68
LDLR-208ENST00000558518 RIOK2Q9BVS4 552 aaKnown RBP10.77□□□□□ -0.68
LDLR-208ENST00000558518 SH2B3Q9UQQ2 575 aa10.77□□□□□ -0.68
LDLR-208ENST00000558518 H3BSH0 61 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 CATP04040 527 aaKnown RBP10.77□□□□□ -0.69
LDLR-208ENST00000558518 C8GP07360 202 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 ASMTP46597 345 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 CTSCP53634 463 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 FABP5Q01469 135 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 FAM27D1Q5T7N8 215 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 MED27Q6P2C8 311 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 MACC1Q6ZN28 852 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 TMCO2Q7Z6W1 182 aaPredicted RBP10.77□□□□□ -0.69
LDLR-208ENST00000558518 KLBQ86Z14 1044 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 IZUMO1Q8IYV9 350 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 HORMAD2Q8N7B1 307 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 OR8J2Q8NGG1 315 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 UFD1Q92890 307 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 FOPNLQ96NB1 174 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 ARHGAP39Q9C0H5 1083 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 SLC6A16Q9GZN6 736 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 REEP4Q9H6H4 257 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 SLC13A4Q9UKG4 626 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 CORO2BQ9UQ03 480 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 NCKAP1Q9Y2A7 1128 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 PTPRDP23468 1912 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 A0A075B6Q4 140 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 HYKKA2RU49 373 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 H7C0S8 307 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 FFAR1O14842 300 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 OR7A10O76100 309 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 OSMP13725 252 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 ZNF8P17098 575 aaPredicted RBP10.77□□□□□ -0.69
LDLR-208ENST00000558518 GABRB1P18505 474 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 IL1RNP18510 177 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 RECQLP46063 649 aaPredicted RBP10.77□□□□□ -0.69
LDLR-208ENST00000558518 VSX2P58304 361 aaPredicted RBP10.77□□□□□ -0.69
LDLR-208ENST00000558518 SUZ12Q15022 739 aaKnown RBP10.77□□□□□ -0.69
LDLR-208ENST00000558518 SLC30A6Q6NXT4 461 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 LUZP2Q86TE4 346 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 SAMD12Q8N8I0 201 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 OR4M1Q8NGD0 313 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 ZFAND1Q8TCF1 268 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 SLC7A13Q8TCU3 470 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 SLC25A46Q96AG3 418 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 C12orf66Q96MD2 445 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 OR4K3Q96R72 315 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 CDCA4Q9BXL8 241 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 GULP1Q9UBP9 304 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 PLEKHB1Q9UF11 243 aaPredicted RBP10.77□□□□□ -0.69
LDLR-208ENST00000558518 ITM2BQ9Y287 266 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 DYRK1BQ9Y463 629 aa10.77□□□□□ -0.69
LDLR-208ENST00000558518 SDK1Q7Z5N4 2213 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 CPSF4LA6NMK7 179 aaKnown RBP10.76□□□□□ -0.69
LDLR-208ENST00000558518 ZAR1LA6NP61 321 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 IGLV3-27P01718 113 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 MSL3P1P0C860 447 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 C8orf89P0DMQ9 161 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 OR12D1P0DN82 309 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 PPIBP23284 216 aaKnown RBP10.76□□□□□ -0.69
LDLR-208ENST00000558518 TALDO1P37837 337 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 DGKGP49619 791 aa10.76□□□□□ -0.69
LDLR-208ENST00000558518 RAE1P78406 368 aaKnown RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms