RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 NUFIP1Q9UHK0 495 aaKnown RBP15.45■□□□□ 0.06
SHMT2-231ENST00000557433 EXOSC1Q9Y3B2 195 aaKnown RBP15.45■□□□□ 0.06
SHMT2-231ENST00000557433 A6NL46 340 aa15.45■□□□□ 0.06
SHMT2-231ENST00000557433 GABRA5P31644 462 aa15.45■□□□□ 0.06
SHMT2-231ENST00000557433 IL12RB1P42701 662 aa15.45■□□□□ 0.06
SHMT2-231ENST00000557433 MAP2K3P46734 347 aa15.45■□□□□ 0.06
SHMT2-231ENST00000557433 CTSCP53634 463 aa15.45■□□□□ 0.06
SHMT2-231ENST00000557433 DAB2P98082 770 aa15.45■□□□□ 0.06
SHMT2-231ENST00000557433 UBE3AQ05086 875 aa15.45■□□□□ 0.06
SHMT2-231ENST00000557433 TMEM115Q12893 351 aaPredicted RBP15.45■□□□□ 0.06
SHMT2-231ENST00000557433 TARDBPQ13148 414 aaKnown RBP eCLIP15.45■□□□□ 0.06
SHMT2-231ENST00000557433 DPPA4Q7L190 304 aa15.45■□□□□ 0.06
SHMT2-231ENST00000557433 KRT78Q8N1N4 520 aa15.45■□□□□ 0.06
SHMT2-231ENST00000557433 HORMAD2Q8N7B1 307 aa15.45■□□□□ 0.06
SHMT2-231ENST00000557433 C19orf18Q8NEA5 215 aa15.45■□□□□ 0.06
SHMT2-231ENST00000557433 ANGPTL6Q8NI99 470 aa15.45■□□□□ 0.06
SHMT2-231ENST00000557433 TMEM163Q8TC26 289 aa15.45■□□□□ 0.06
SHMT2-231ENST00000557433 UFD1Q92890 307 aa15.45■□□□□ 0.06
SHMT2-231ENST00000557433 ZIC5Q96T25 663 aa15.45■□□□□ 0.06
SHMT2-231ENST00000557433 RBFOX1Q9NWB1 397 aaKnown RBP15.45■□□□□ 0.06
SHMT2-231ENST00000557433 DKK3Q9UBP4 350 aa15.45■□□□□ 0.06
SHMT2-231ENST00000557433 TRAV19A0A0A6YYK7 116 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-231ENST00000557433 PLD2O14939 933 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 PI15O43692 258 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 NME6O75414 186 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-231ENST00000557433 SOX14O95416 240 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 PRKAR1AP10644 381 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 ETV3P41162 512 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 SMSP52788 366 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 EFNB1P98172 346 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 TNK1Q13470 666 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 GPR19Q15760 415 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 ZNF658BQ4V348 819 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-231ENST00000557433 SYT14P1Q58G82 188 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 ZNF648Q5T619 568 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-231ENST00000557433 TRIQKQ629K1 86 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 C22orf42Q6IC83 251 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 CD200R1LQ6Q8B3 271 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 TECPR1Q7Z6L1 1165 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 SLC9B2Q86UD5 537 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 CHST14Q8NCH0 376 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 NR4A3Q92570 626 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 ZNF689Q96CS4 500 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-231ENST00000557433 ZNF582Q96NG8 517 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-231ENST00000557433 QRFPRQ96P65 431 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 SOSTQ9BQB4 213 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 PRRG3Q9BZD7 231 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 ZCCHC2Q9C0B9 1178 aaKnown RBP15.44■□□□□ 0.06
SHMT2-231ENST00000557433 TVP23BQ9NYZ1 205 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 SPG21Q9NZD8 308 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 ADAM30Q9UKF2 790 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 ASB4Q9Y574 426 aa15.44■□□□□ 0.06
SHMT2-231ENST00000557433 SPIN1Q9Y657 262 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-231ENST00000557433 CARNS1A5YM72 827 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 A8MV72 311 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-231ENST00000557433 FAM227AF5H4B4 570 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 PLA2G10O15496 165 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 PDPK1O15530 556 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 C1QBP02746 253 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 GBAP04062 536 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 TP53P04637 393 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-231ENST00000557433 ACP2P11117 423 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 CHRNB1P11230 501 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 GPC1P35052 558 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 FEN1P39748 380 aaKnown RBP15.43■□□□□ 0.06
SHMT2-231ENST00000557433 KIR2DL3P43628 341 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 CDK5Q00535 292 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 GALK2Q01415 458 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 FAPQ12884 760 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 TMEM44Q2T9K0 475 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 ENTPD8Q5MY95 495 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 ATAT1Q5SQI0 421 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 TMEM220Q6QAJ8 160 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 CMTM8Q8IZV2 173 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 OR2A12Q8NGT7 310 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 ZFYVE19Q96K21 471 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 SPATA5L1Q9BVQ7 753 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 ING3Q9NXR8 418 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 FAM8A1Q9UBU6 413 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 PCM1Q15154 2024 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 TRDV1A0A1B0GX56 115 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 WWP2O00308 870 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 PRODHO43272 600 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 TLX2O43763 284 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-231ENST00000557433 PRKYO43930 277 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 SH3BP5O60239 455 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 OBSL1O75147 1896 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 GABRR2P28476 465 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 FRKP42685 505 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-231ENST00000557433 GIPRP48546 466 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 GZMKP49863 264 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 MXD1Q05195 221 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 PRSS53Q2L4Q9 553 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 LRRC73Q5JTD7 316 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 SLC36A4Q6YBV0 504 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 DEF8Q6ZN54 512 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 Q6ZVU0 165 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 ZNF767PQ75MW2 155 aa15.43■□□□□ 0.06
SHMT2-231ENST00000557433 SLC7A13Q8TCU3 470 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms