RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 UBAP2LQ14157 1087 aaKnown RBP11.97□□□□□ -0.49
SHMT2-227ENST00000557269 ELAVL1Q15717 326 aaKnown RBP11.97□□□□□ -0.49
SHMT2-227ENST00000557269 DEFB109BQ30KR1 87 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 SPANXN4Q5MJ08 99 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 CPTPQ5TA50 214 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 METTL21CQ5VZV1 264 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 OR4F3Q6IEY1 312 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 PAPD4Q6PIY7 484 aaKnown RBP11.97□□□□□ -0.49
SHMT2-227ENST00000557269 FAM111BQ6SJ93 734 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 NDUFAF7Q7L592 441 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 ZNF551Q7Z340 670 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-227ENST00000557269 R3HCC1LQ7Z5L2 792 aaKnown RBP11.97□□□□□ -0.49
SHMT2-227ENST00000557269 FUNDC1Q8IVP5 155 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 ST13P4Q8IZP2 240 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-227ENST00000557269 MIER2Q8N344 545 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 LRRC25Q8N386 305 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-227ENST00000557269 ZSCAN1Q8NBB4 408 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 ADCY4Q8NFM4 1077 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 OR9A2Q8NGT5 310 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 RBM18Q96H35 190 aaKnown RBP11.97□□□□□ -0.49
SHMT2-227ENST00000557269 ZNF764Q96H86 408 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-227ENST00000557269 AMDHD1Q96NU7 426 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 NSRP1Q9H0G5 558 aaKnown RBP11.97□□□□□ -0.49
SHMT2-227ENST00000557269 GLIPR2Q9H4G4 154 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 ADAP2Q9NPF8 381 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 ZIM2Q9NZV7 527 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 C19orf25Q9UFG5 118 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-227ENST00000557269 ERVK-11Q9UQG0 969 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 ZNF780BQ9Y6R6 833 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 NSG1A0A0A6YYJ2 146 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 SAGE2PA6NJ88 616 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 PEX12O00623 359 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 PCDH17O14917 1159 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 PDPK1O15530 556 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 SCN2BO60939 215 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 HPP00738 406 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 CLPSP04118 112 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 ATP1B1P05026 303 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 S1PR1P21453 382 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 NT5EP21589 574 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 FRKP42685 505 aaPredicted RBP11.96□□□□□ -0.49
SHMT2-227ENST00000557269 ATP4BP51164 291 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 GPR143P51810 404 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 PGDP52209 483 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 NCBP2P52298 156 aaKnown RBP eCLIP11.96□□□□□ -0.49
SHMT2-227ENST00000557269 SLC26A5P58743 744 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 CXADRP78310 365 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 PLIN5Q00G26 463 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 SQLEQ14534 574 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 PRICKLE4Q2TBC4 344 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 FAM174BQ3ZCQ3 159 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 DCAF10Q5QP82 559 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 CAMKMTQ7Z624 323 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 CPSF7Q8N684 471 aaKnown RBP11.96□□□□□ -0.49
SHMT2-227ENST00000557269 THAP4Q8WY91 577 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 KAT2AQ92830 837 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 RIT1Q92963 219 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 TESCQ96BS2 214 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 BBS4Q96RK4 519 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 LPAR4Q99677 370 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 DUSP26Q9BV47 211 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 ANKRA2Q9H9E1 313 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 CXorf21Q9HAI6 301 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 SLC52A3Q9NQ40 469 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 SAR1AQ9NR31 198 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 MAT2BQ9NZL9 334 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 ZNF223Q9UK11 482 aaPredicted RBP11.96□□□□□ -0.49
SHMT2-227ENST00000557269 TRIM33Q9UPN9 1127 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 ENTPD4Q9Y227 616 aa11.96□□□□□ -0.49
SHMT2-227ENST00000557269 NME6O75414 186 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-227ENST00000557269 DNAJB5O75953 348 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 FAM107AO95990 144 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 PCSK2P16519 638 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 SSTR4P31391 388 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 RPL3P39023 403 aaKnown RBP11.95□□□□□ -0.5
SHMT2-227ENST00000557269 CDK9P50750 372 aaKnown RBP11.95□□□□□ -0.5
SHMT2-227ENST00000557269 UCNP55089 124 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 STX1BP61266 288 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 MRPS35P82673 323 aaKnown RBP11.95□□□□□ -0.5
SHMT2-227ENST00000557269 DUSP8Q13202 625 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 BIKQ13323 160 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 ZNF267Q14586 743 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-227ENST00000557269 AGKQ53H12 422 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 TRMT12Q53H54 448 aaKnown RBP11.95□□□□□ -0.5
SHMT2-227ENST00000557269 ZNF628Q5EBL2 1059 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 C19orf48Q6RUI8 117 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 ANKRD46Q86W74 232 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 CLECL1Q8IZS7 167 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 FAM9CQ8IZT9 166 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 KIF2BQ8N4N8 673 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 APCDD1LQ8NCL9 501 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 OR8J2Q8NGG1 315 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 SLC2A12Q8TD20 617 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 ZNF721Q8TF20 911 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 SNRNP27Q8WVK2 155 aaKnown RBP11.95□□□□□ -0.5
SHMT2-227ENST00000557269 VPS33AQ96AX1 596 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 SENP5Q96HI0 755 aaPredicted RBP11.95□□□□□ -0.5
SHMT2-227ENST00000557269 IP6K3Q96PC2 410 aa11.95□□□□□ -0.5
SHMT2-227ENST00000557269 PRPF18Q99633 342 aaKnown RBP11.95□□□□□ -0.5
SHMT2-227ENST00000557269 TUBB6Q9BUF5 446 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms