RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 UBAP2LQ14157 1087 aaKnown RBP12.73□□□□□ -0.37
SHMT2-219ENST00000555563 ZNF267Q14586 743 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-219ENST00000555563 ZNF750Q32MQ0 723 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 SPDYAQ5MJ70 313 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 CEP85LQ5SZL2 805 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 SLC25A25Q6KCM7 469 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 ZCCHC23Q6ZST2 131 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 GALNTL5Q7Z4T8 443 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 CYP4Z2PQ8N1L4 340 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 TMEM156Q8N614 296 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 TMEM178AQ8NBL3 297 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 ST6GALNAC3Q8NDV1 305 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 C11orf24Q96F05 449 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-219ENST00000555563 FRMD6Q96NE9 622 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 ZIM3Q96PE6 472 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 TRMOQ9BU70 441 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 FAIM2Q9BWQ8 316 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 CXorf21Q9HAI6 301 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 HEY2Q9UBP5 337 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 CES1P1Q9UKY3 287 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 YARS2Q9Y2Z4 477 aaKnown RBP12.73□□□□□ -0.37
SHMT2-219ENST00000555563 PTGDR2Q9Y5Y4 395 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 GNG14A0A1W2PPG7 69 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 ASPDHA6ND91 283 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 OR6B1O95007 311 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 CRYABP02511 175 aaKnown RBP12.72□□□□□ -0.37
SHMT2-219ENST00000555563 CLPSP04118 112 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 CHRNGP07510 517 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 IL3P08700 152 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 EDN3P14138 238 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 MST1P26927 711 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 GALNSP34059 522 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 DEKP35659 375 aaKnown RBP12.72□□□□□ -0.37
SHMT2-219ENST00000555563 SOX3P41225 446 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 ALDH9A1P49189 494 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 XKP51811 444 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 MAPKAPK3Q16644 382 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 IMPG1Q17R60 797 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 EIF2S3LQ2VIR3 472 aaKnown RBP12.72□□□□□ -0.37
SHMT2-219ENST00000555563 GALNT18Q6P9A2 607 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 TRIM46Q7Z4K8 759 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 LURAP1LQ8IV03 231 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 GALNT12Q8IXK2 581 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 FAM26EQ8N5C1 309 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 OR5L2Q8NGL0 311 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 NUBPLQ8TB37 319 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 PRR7Q8TB68 274 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 ASB15Q8WXK1 588 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 TMEM125Q96AQ2 219 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 KLHL29Q96CT2 875 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 CENPHQ9H3R5 247 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.72□□□□□ -0.376e-6■■□□□ 12.1
SHMT2-219ENST00000555563 DLGAP4Q9Y2H0 992 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 FIS1Q9Y3D6 152 aa12.72□□□□□ -0.37
SHMT2-219ENST00000555563 GOLGA6L10A6NI86 522 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 A8MVJ9 347 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 AZIN1O14977 448 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 NPHS1O60500 1241 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 ZNF354AO60765 605 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-219ENST00000555563 SEMA7AO75326 666 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 ERAL1O75616 437 aaKnown RBP12.71□□□□□ -0.37
SHMT2-219ENST00000555563 RSL1D1O76021 490 aaKnown RBP12.71□□□□□ -0.37
SHMT2-219ENST00000555563 CT62P0C5K7 136 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 PORP16435 677 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-219ENST00000555563 NT5EP21589 574 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 SSTR4P31391 388 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 PTGER1P34995 402 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 ETV4P43268 484 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 SLC37A1P57057 533 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 DUSP2Q05923 314 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 ZNF763Q0D2J5 394 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 ELOAQ14241 798 aaKnown RBP12.71□□□□□ -0.37
SHMT2-219ENST00000555563 EBPQ15125 230 aaKnown RBP12.71□□□□□ -0.37
SHMT2-219ENST00000555563 ARL13AQ5H913 290 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-219ENST00000555563 FHL5Q5TD97 284 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 KANK2Q63ZY3 851 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 FAM180BQ6P0A1 224 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 RNF111Q6ZNA4 994 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 MDGA2Q7Z553 956 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-219ENST00000555563 GPALPP1Q8IXQ4 340 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 FAM98AQ8NCA5 519 aaKnown RBP12.71□□□□□ -0.37
SHMT2-219ENST00000555563 DNAJB8Q8NHS0 232 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 C16orf78Q8WTQ4 265 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 CNRIP1Q96F85 164 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-219ENST00000555563 GAL3ST4Q96RP7 486 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 RRAGDQ9NQL2 400 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-219ENST00000555563 HPF1Q9NWY4 346 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 SIRT5Q9NXA8 310 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 ERVK-11Q9UQG0 969 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 KLF13Q9Y2Y9 288 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-219ENST00000555563 CCL27Q9Y4X3 112 aa12.71□□□□□ -0.37
SHMT2-219ENST00000555563 POLR3HQ9Y535 204 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-219ENST00000555563 TMEM233B4DJY2 109 aa12.7□□□□□ -0.38
SHMT2-219ENST00000555563 AGFG2O95081 481 aa12.7□□□□□ -0.38
SHMT2-219ENST00000555563 ATP1B1P05026 303 aa12.7□□□□□ -0.38
SHMT2-219ENST00000555563 BPGMP07738 259 aa12.7□□□□□ -0.38
SHMT2-219ENST00000555563 ANXA4P09525 319 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-219ENST00000555563 CSNK2A2P19784 350 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-219ENST00000555563 ARRB2P32121 409 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms