RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 SHISA5Q8N114 240 aa11.39□□□□□ -0.59
DDX55-210ENST00000543016 MIER2Q8N344 545 aa11.39□□□□□ -0.59
DDX55-210ENST00000543016 VPS37AQ8NEZ2 397 aa11.39□□□□□ -0.59
DDX55-210ENST00000543016 B3GNT7Q8NFL0 401 aa11.39□□□□□ -0.59
DDX55-210ENST00000543016 OR8J2Q8NGG1 315 aa11.39□□□□□ -0.59
DDX55-210ENST00000543016 RFWD2Q8NHY2 731 aa11.39□□□□□ -0.59
DDX55-210ENST00000543016 ZNF675Q8TD23 568 aa11.39□□□□□ -0.59
DDX55-210ENST00000543016 APOBEC4Q8WW27 367 aaKnown RBP11.39□□□□□ -0.59
DDX55-210ENST00000543016 RIT1Q92963 219 aa11.39□□□□□ -0.59
DDX55-210ENST00000543016 EXOSC8Q96B26 276 aaKnown RBP11.39□□□□□ -0.59
DDX55-210ENST00000543016 ZBED6CLQ96FA7 236 aaPredicted RBP11.39□□□□□ -0.59
DDX55-210ENST00000543016 BBS4Q96RK4 519 aa11.39□□□□□ -0.59
DDX55-210ENST00000543016 WDR77Q9BQA1 342 aaPredicted RBP11.39□□□□□ -0.59
DDX55-210ENST00000543016 EBF4Q9BQW3 602 aa11.39□□□□□ -0.59
DDX55-210ENST00000543016 BHLHE41Q9C0J9 482 aaPredicted RBP11.39□□□□□ -0.59
DDX55-210ENST00000543016 MMP25Q9NPA2 562 aa11.39□□□□□ -0.59
DDX55-210ENST00000543016 PNO1Q9NRX1 252 aaKnown RBP11.39□□□□□ -0.59
DDX55-210ENST00000543016 SH3BP4Q9P0V3 963 aa11.39□□□□□ -0.59
DDX55-210ENST00000543016 G3BP2Q9UN86 482 aaKnown RBP11.39□□□□□ -0.59
DDX55-210ENST00000543016 BOLA1Q9Y3E2 137 aa11.39□□□□□ -0.59
DDX55-210ENST00000543016 CCDC88CQ9P219 2028 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 DYTNA2CJ06 578 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 C17orf105B2RV13 164 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 TGFBR3LH3BV60 316 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 PDPK1O15530 556 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 AKAP10O43572 662 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 SLC22A3O75751 556 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 LRATO95237 230 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 IL6P05231 212 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 ADSLP30566 484 aaPredicted RBP11.38□□□□□ -0.59
DDX55-210ENST00000543016 FRKP42685 505 aaPredicted RBP11.38□□□□□ -0.59
DDX55-210ENST00000543016 KIR3DL1P43629 444 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 GYS2P54840 703 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 SLC26A5P58743 744 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 CXADRP78310 365 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 EEF1A2Q05639 463 aaKnown RBP11.38□□□□□ -0.59
DDX55-210ENST00000543016 MAP4K2Q12851 820 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 SQLEQ14534 574 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 ANXA8L1Q5VT79 327 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 GPR155Q7Z3F1 870 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 GALNT12Q8IXK2 581 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 OR7G1Q8NGA0 311 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 OR8K3Q8NH51 312 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 CLHC1Q8NHS4 586 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 PTPMT1Q8WUK0 201 aaPredicted RBP11.38□□□□□ -0.59
DDX55-210ENST00000543016 C8orf44Q96CB5 159 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 CNRIP1Q96F85 164 aaPredicted RBP11.38□□□□□ -0.59
DDX55-210ENST00000543016 VMP1Q96GC9 406 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 FBXL20Q96IG2 436 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 TMEM120AQ9BXJ8 343 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 MFRPQ9BY79 579 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 ING2Q9H160 280 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 EPN3Q9H201 632 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 PRORYQ9H606 182 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 CLMPQ9H6B4 373 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 CXorf21Q9HAI6 301 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 CPNE5Q9HCH3 593 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 COPS7AQ9UBW8 275 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 ADAM21Q9UKJ8 722 aa11.38□□□□□ -0.59
DDX55-210ENST00000543016 WASHC1A8K0Z3 465 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 E9PBE3 544 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 SHOX2O60902 331 aaPredicted RBP11.37□□□□□ -0.59
DDX55-210ENST00000543016 SEC24DO94855 1032 aaPredicted RBP11.37□□□□□ -0.59
DDX55-210ENST00000543016 NT5EP21589 574 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 DRD4P21917 467 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 FEN1P39748 380 aaKnown RBP11.37□□□□□ -0.59
DDX55-210ENST00000543016 CLCN2P51788 898 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 GPR143P51810 404 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 SEC24CP53992 1094 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 RHDQ02161 417 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 ID2Q02363 134 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 ST3GAL2Q16842 350 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 DEFB109BQ30KR1 87 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 CGB2Q6NT52 195 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 BORAQ6PGQ7 559 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 MSANTD1Q6ZTZ1 278 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 SPATA21Q7Z572 469 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 CCDC116Q8IYX3 515 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 MMP21Q8N119 569 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 LGI4Q8N135 537 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 CPSF7Q8N684 471 aaKnown RBP11.37□□□□□ -0.59
DDX55-210ENST00000543016 NFAM1Q8NET5 270 aaPredicted RBP11.37□□□□□ -0.59
DDX55-210ENST00000543016 OR1N1Q8NGS0 311 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 TSPEARQ8WU66 669 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 OR5P2Q8WZ92 322 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 UCN3Q969E3 161 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 GFM2Q969S9 779 aaKnown RBP11.37□□□□□ -0.59
DDX55-210ENST00000543016 CTHRC1Q96CG8 243 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 DUSP26Q9BV47 211 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 SEMA4CQ9C0C4 833 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 ZNF160Q9HCG1 818 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 FAM120CQ9NX05 1096 aaKnown RBP11.37□□□□□ -0.59
DDX55-210ENST00000543016 C5AR2Q9P296 337 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 CFL2Q9Y281 166 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 KCNMB2Q9Y691 235 aa11.37□□□□□ -0.59
DDX55-210ENST00000543016 WDFY3Q8IZQ1 3526 aa11.36□□□□□ -0.59
DDX55-210ENST00000543016 MAP1BP46821 2468 aaKnown RBP11.36□□□□□ -0.59
DDX55-210ENST00000543016 A0A087WV62 115 aa11.36□□□□□ -0.59
DDX55-210ENST00000543016 PRSS51A0A1B0GVH4 220 aa11.36□□□□□ -0.59
DDX55-210ENST00000543016 FAM234BA2RU67 622 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms