RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 NSG1A0A0A6YYJ2 146 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 A0A1W2PS29 197 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 A8MUA0 341 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 MYO1GB0I1T2 1018 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 ATP1B1P05026 303 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 TNNI3P19429 210 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 SRSF11Q05519 484 aaKnown RBP16.01■□□□□ 0.15
LIG1-204ENST00000542460 VAC14Q08AM6 782 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 PCOLCEQ15113 449 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 PRSS53Q2L4Q9 553 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 DPY19L1Q2PZI1 675 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 CPZQ66K79 652 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 PAPD4Q6PIY7 484 aaKnown RBP16.01■□□□□ 0.15
LIG1-204ENST00000542460 CAMKMTQ7Z624 323 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 PIGWQ7Z7B1 504 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 CCDC116Q8IYX3 515 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 NUDT8Q8WV74 236 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 DAZLQ92904 295 aaKnown RBP16.01■□□□□ 0.15
LIG1-204ENST00000542460 TEX37Q96LM6 180 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 FER1L6-AS2Q96M78 137 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 CCT8L2Q96SF2 557 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 ZBTB18Q99592 522 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 WDR77Q9BQA1 342 aaPredicted RBP16.01■□□□□ 0.15
LIG1-204ENST00000542460 RABEP2Q9H5N1 569 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 CLMPQ9H6B4 373 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 CPNE5Q9HCH3 593 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 MRGBPQ9NV56 204 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 FBXL4Q9UKA2 621 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 RALYQ9UKM9 306 aaKnown RBP16.01■□□□□ 0.15
LIG1-204ENST00000542460 COPG1Q9Y678 874 aaKnown RBP16.01■□□□□ 0.15
LIG1-204ENST00000542460 CLCA3PQ9Y6N3 262 aa16.01■□□□□ 0.15
LIG1-204ENST00000542460 DSPP15924 2871 aaKnown RBP16.01■□□□□ 0.15
LIG1-204ENST00000542460 ANKRD11Q6UB99 2663 aaPredicted RBP16■□□□□ 0.15
LIG1-204ENST00000542460 PDPK1O15530 556 aa16■□□□□ 0.15
LIG1-204ENST00000542460 DYRK3O43781 588 aa16■□□□□ 0.15
LIG1-204ENST00000542460 SEC24DO94855 1032 aaPredicted RBP16■□□□□ 0.15
LIG1-204ENST00000542460 FAM107AO95990 144 aa16■□□□□ 0.15
LIG1-204ENST00000542460 HPP00738 406 aa16■□□□□ 0.15
LIG1-204ENST00000542460 LAMP1P11279 417 aa16■□□□□ 0.15
LIG1-204ENST00000542460 GPX3P22352 226 aa16■□□□□ 0.15
LIG1-204ENST00000542460 NTSP30990 170 aa16■□□□□ 0.15
LIG1-204ENST00000542460 SQLEQ14534 574 aa16■□□□□ 0.15
LIG1-204ENST00000542460 PGS1Q32NB8 556 aa16■□□□□ 0.15
LIG1-204ENST00000542460 ZNF385BQ569K4 471 aa16■□□□□ 0.15
LIG1-204ENST00000542460 OR8J2Q8NGG1 315 aa16■□□□□ 0.15
LIG1-204ENST00000542460 OR14A16Q8NHC5 309 aa16■□□□□ 0.15
LIG1-204ENST00000542460 PTPMT1Q8WUK0 201 aaPredicted RBP16■□□□□ 0.15
LIG1-204ENST00000542460 RIT1Q92963 219 aa16■□□□□ 0.15
LIG1-204ENST00000542460 IMMP1LQ96LU5 166 aa16■□□□□ 0.15
LIG1-204ENST00000542460 DUSP26Q9BV47 211 aa16■□□□□ 0.15
LIG1-204ENST00000542460 BHLHE41Q9C0J9 482 aaPredicted RBP16■□□□□ 0.15
LIG1-204ENST00000542460 TMEM45AQ9NWC5 275 aa16■□□□□ 0.15
LIG1-204ENST00000542460 PKD1L2Q7Z442 2459 aa16■□□□□ 0.15
LIG1-204ENST00000542460 SAGE2PA6NJ88 616 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 C17orf105B2RV13 164 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 ICAM2P13598 275 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 IL12AP29459 219 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 FRKP42685 505 aaPredicted RBP15.99■□□□□ 0.15
LIG1-204ENST00000542460 RRADP55042 308 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 MPEG1Q2M385 716 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 DCAF10Q5QP82 559 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 PAOXQ6QHF9 649 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 TMEM102Q8N9M5 508 aaPredicted RBP15.99■□□□□ 0.15
LIG1-204ENST00000542460 CIDECQ96AQ7 238 aaPredicted RBP15.99■□□□□ 0.15
LIG1-204ENST00000542460 ZBED6CLQ96FA7 236 aaPredicted RBP15.99■□□□□ 0.15
LIG1-204ENST00000542460 ZNF160Q9HCG1 818 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 ACSS1Q9NUB1 689 aaPredicted RBP15.99■□□□□ 0.15
LIG1-204ENST00000542460 MAN2B2Q9Y2E5 1009 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 CCDC88CQ9P219 2028 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 NT5EP21589 574 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 KIR3DL1P43629 444 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 NCBP2P52298 156 aaKnown RBP eCLIP15.99■□□□□ 0.15
LIG1-204ENST00000542460 DUSP2Q05923 314 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 EXT1Q16394 746 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 SPRED3Q2MJR0 410 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 FAM174BQ3ZCQ3 159 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 SPANXN4Q5MJ08 99 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 C6orf163Q5TEZ5 329 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 DGAT2L6Q6ZPD8 337 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 GALNT12Q8IXK2 581 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 CPSF7Q8N684 471 aaKnown RBP15.99■□□□□ 0.15
LIG1-204ENST00000542460 MORN4Q8NDC4 146 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 NFAM1Q8NET5 270 aaPredicted RBP15.99■□□□□ 0.15
LIG1-204ENST00000542460 ZFP28Q8NHY6 868 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 SUN3Q8TAQ9 357 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 SNRNP27Q8WVK2 155 aaKnown RBP15.99■□□□□ 0.15
LIG1-204ENST00000542460 AMDHD1Q96NU7 426 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 ZNF385DQ9H6B1 395 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 CXorf21Q9HAI6 301 aa15.99■□□□□ 0.15
LIG1-204ENST00000542460 PPIEQ9UNP9 301 aaKnown RBP15.99■□□□□ 0.15
LIG1-204ENST00000542460 ARGFXA6NJG6 315 aa15.98■□□□□ 0.15
LIG1-204ENST00000542460 IL6P05231 212 aa15.98■□□□□ 0.15
LIG1-204ENST00000542460 S100A3P33764 101 aa15.98■□□□□ 0.15
LIG1-204ENST00000542460 PGDP52209 483 aa15.98■□□□□ 0.15
LIG1-204ENST00000542460 POLR2JP52435 117 aaKnown RBP15.98■□□□□ 0.15
LIG1-204ENST00000542460 MANFP55145 182 aaKnown RBP15.98■□□□□ 0.15
LIG1-204ENST00000542460 SLC26A5P58743 744 aa15.98■□□□□ 0.15
LIG1-204ENST00000542460 CXADRP78310 365 aa15.98■□□□□ 0.15
LIG1-204ENST00000542460 MAP4K2Q12851 820 aa15.98■□□□□ 0.15
LIG1-204ENST00000542460 MLC1Q15049 377 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms