RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 TNMDQ9H2S6 317 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 DPEP3Q9H4B8 488 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 ZDHHC6Q9H6R6 413 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 GNB4Q9HAV0 340 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 PRMT8Q9NR22 394 aaPredicted RBP2.23□□□□□ -2.05
CD44-238ENST00000534296 DEPPQ9NTK1 212 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 ANO10Q9NW15 660 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 THAP10Q9P2Z0 257 aaPredicted RBP2.23□□□□□ -2.05
CD44-238ENST00000534296 SEC14L4Q9UDX3 406 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 PSORS1C1Q9UIG5 152 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 CCPG1Q9ULG6 757 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 ENTPD4Q9Y227 616 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 MRPS18CQ9Y3D5 142 aaKnown RBP2.23□□□□□ -2.05
CD44-238ENST00000534296 SPAG9O60271 1321 aaKnown RBP2.22□□□□□ -2.05
CD44-238ENST00000534296 NEDD4P46934 1319 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 TRGV8A0A0C4DH27 118 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 IGHV3-38A0A0C4DH36 116 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 A0A1B0GTH9 108 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 MACROD2A1Z1Q3 448 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 A8MU10 97 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 SHISA9B4DS77 424 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 G3V2L1 256 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 REC8O95072 547 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 CPNE6O95741 557 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 NUDT17P0C025 328 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 B4GALT1P15291 398 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 CYP3A5P20815 502 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 GPX3P22352 226 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 TMOD1P28289 359 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 MATKP42679 507 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 SRP54P61011 504 aaKnown RBP2.22□□□□□ -2.05
CD44-238ENST00000534296 TRA2BP62995 288 aaKnown RBP2.22□□□□□ -2.05
CD44-238ENST00000534296 HERV-K104P63124 156 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 CD300CQ08708 224 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 PDE7AQ13946 482 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 P2RY14Q15391 338 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 OR1C1Q15619 314 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 CDC37Q16543 378 aaPredicted RBP2.22□□□□□ -2.05
CD44-238ENST00000534296 KNOP1Q1ED39 458 aaKnown RBP2.22□□□□□ -2.05
CD44-238ENST00000534296 CMPK2Q5EBM0 449 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 TEX35Q5T0J7 233 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 RSBN1Q5VWQ0 802 aaPredicted RBP2.22□□□□□ -2.05
CD44-238ENST00000534296 NKAIN2Q5VXU1 208 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 CDC42EP5Q6NZY7 148 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 ABRAXAS1Q6UWZ7 409 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 TAF8Q7Z7C8 310 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 ERICH1Q86X53 443 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 CACUL1Q86Y37 369 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 LINC00518Q8N0U6 118 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 PARP8Q8N3A8 854 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 FGFRL1Q8N441 504 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 COLGALT1Q8NBJ5 622 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 SUMF1Q8NBK3 374 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 RHOXF1Q8NHV9 184 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 RDH11Q8TC12 318 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 KIAA1524Q8TCG1 905 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.22□□□□□ -2.05
CD44-238ENST00000534296 RAB40CQ96S21 281 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 ATP6V0BQ99437 205 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 SPXQ9BT56 116 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 SYTL2Q9HCH5 934 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 HPS4Q9NQG7 708 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 PNPLA3Q9NST1 481 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 FAM212BQ9NTI7 297 aaPredicted RBP2.22□□□□□ -2.05
CD44-238ENST00000534296 PIGVQ9NUD9 493 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 MIS18AQ9NYP9 233 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 FAM153AQ9UHL3 310 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 CPQQ9Y646 472 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 MYH15Q9Y2K3 1946 aa2.22□□□□□ -2.05
CD44-238ENST00000534296 AFF2P51816 1311 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 IGHV3-20A0A0C4DH32 117 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 ATP6AP2A0A1C7CYW4 349 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 LOC390937A0A1W2PQ73 354 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 KRT87PA6NCN2 255 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 C5orf51A6NDU8 294 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 CCDC69A6NI79 296 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 SHISA7A6NL88 538 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 RNF212BA8MTL3 300 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 A8MU76 341 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 H0YIG0 161 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 EI24O14681 340 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 P2RX6O15547 441 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 HTATSF1O43719 755 aaKnown RBP2.21□□□□□ -2.06
CD44-238ENST00000534296 NME2P1O60361 137 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 BCAS2O75934 225 aaPredicted RBP2.21□□□□□ -2.06
CD44-238ENST00000534296 STBD1O95210 358 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 SYNGR4O95473 234 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 NUDT14O95848 222 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 OLFM2O95897 454 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 MT-ATP6P00846 226 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 PROS1P07225 676 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 FCGR3AP08637 254 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 OR9G9P0C7N8 305 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 RALAP11233 206 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 FOLR2P14207 255 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 GP9P14770 177 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 GNSP15586 552 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 LMO2P25791 158 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 ETV5P41161 510 aa2.21□□□□□ -2.06
CD44-238ENST00000534296 SLC1A4P43007 532 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms