RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 OR7G3Q8NG95 312 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 OR5L2Q8NGL0 311 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 LINC01560Q8TB33 94 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 RNASE6Q93091 150 aaKnown RBP13.08□□□□□ -0.32
CPSF1-201ENST00000526271 LRRC39Q96DD0 335 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 RMND5BQ96G75 393 aaPredicted RBP13.08□□□□□ -0.32
CPSF1-201ENST00000526271 FBXL20Q96IG2 436 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 ERVK-6Q9BXR3 956 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 RAB17Q9H0T7 212 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 COPS7BQ9H9Q2 264 aaPredicted RBP13.08□□□□□ -0.32
CPSF1-201ENST00000526271 POPDC3Q9HBV1 291 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 JKAMPQ9P055 326 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 WHRNQ9P202 907 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 DMGDHQ9UI17 866 aaKnown RBP13.08□□□□□ -0.32
CPSF1-201ENST00000526271 ERVK-19Q9WJR5 959 aa13.08□□□□□ -0.32
CPSF1-201ENST00000526271 ROS1P08922 2347 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 A0A088AWK7 358 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 PLPP1O14494 284 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 EEDO75530 441 aaKnown RBP13.07□□□□□ -0.32
CPSF1-201ENST00000526271 CT62P0C5K7 136 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 CCDC166P0CW27 439 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 MTHFD2P13995 350 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 GABRA1P14867 456 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 ZNF10P21506 573 aaPredicted RBP13.07□□□□□ -0.32
CPSF1-201ENST00000526271 CPN2P22792 545 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 SSTR1P30872 391 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 RPL21P46778 160 aaKnown RBP13.07□□□□□ -0.32
CPSF1-201ENST00000526271 ASCL1P50553 236 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 TNFRSF17Q02223 184 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 PCDH1Q08174 1060 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 PDIA2Q13087 525 aaKnown RBP13.07□□□□□ -0.32
CPSF1-201ENST00000526271 NTRK2Q16620 822 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 DEPDC1Q5TB30 811 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 SULT1C3Q6IMI6 304 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 CAPN12Q6ZSI9 719 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 FRA10AC1Q70Z53 315 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 MYRIPQ8NFW9 859 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 GABPB2Q8TAK5 448 aaPredicted RBP13.07□□□□□ -0.32
CPSF1-201ENST00000526271 FAM222BQ8WU58 562 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 ARSGQ96EG1 525 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 EFCAB11Q9BUY7 163 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 TRIM31Q9BZY9 425 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 WWTR1Q9GZV5 400 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 PRDM14Q9GZV8 571 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 EPB41L4BQ9H329 900 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 GRHL1Q9NZI5 618 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 B4GALT7Q9UBV7 327 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 SLC6A5Q9Y345 797 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 ASB4Q9Y574 426 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 RAI1Q7Z5J4 1906 aaPredicted RBP13.07□□□□□ -0.32
CPSF1-201ENST00000526271 PRR14LQ5THK1 2151 aa13.07□□□□□ -0.32
CPSF1-201ENST00000526271 HEATR5AQ86XA9 2040 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 PCNX3Q9H6A9 2034 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 FBN1P35555 2871 aaKnown RBP13.06□□□□□ -0.32
CPSF1-201ENST00000526271 A0A1W2PR48 441 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 LRRC14BA6NHZ5 514 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 CLGNO14967 610 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 FAM155BO75949 473 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 ACSL3O95573 720 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 SSTR4P31391 388 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 TIMP3P35625 211 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 FBXW4P57775 412 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 KCNJ2P63252 427 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 IRF8Q02556 426 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 LTBQ06643 244 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 FOXF2Q12947 444 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 SLAMF1Q13291 335 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 TRADDQ15628 312 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 SPRED3Q2MJR0 410 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 DEFB113Q30KQ7 82 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 EIPR1Q53HC9 387 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 CDKL4Q5MAI5 379 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 KHDRBS2Q5VWX1 349 aaKnown RBP13.06□□□□□ -0.32
CPSF1-201ENST00000526271 VASNQ6EMK4 673 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 ISCA2Q86U28 154 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 SLC15A4Q8N697 577 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 C9orf106Q8NAJ2 232 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 FAM13CQ8NE31 585 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 WDYHV1Q96HA8 205 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 GNRHR2Q96P88 292 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 DGAT2Q96PD7 388 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 GAL3ST4Q96RP7 486 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 ATOH8Q96SQ7 321 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 GPR22Q99680 433 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 G6PC3Q9BUM1 346 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 CAPS2Q9BXY5 557 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 CD244Q9BZW8 370 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 EXO5Q9H790 373 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 RPF2Q9H7B2 306 aaKnown RBP13.06□□□□□ -0.32
CPSF1-201ENST00000526271 SLC24A3Q9HC58 644 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 QPCTLQ9NXS2 382 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 DTX4Q9Y2E6 619 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 COL6A5A8TX70 2615 aa13.06□□□□□ -0.32
CPSF1-201ENST00000526271 A0A0A6YYD5 115 aa13.05□□□□□ -0.32
CPSF1-201ENST00000526271 A0A1B0GTL3 188 aa13.05□□□□□ -0.32
CPSF1-201ENST00000526271 GLOD5A6NK44 160 aa13.05□□□□□ -0.32
CPSF1-201ENST00000526271 HSPB2A8KAH6 182 aa13.05□□□□□ -0.32
CPSF1-201ENST00000526271 B4DXG7 233 aa13.05□□□□□ -0.32
CPSF1-201ENST00000526271 SIAH2O43255 324 aa13.05□□□□□ -0.32
CPSF1-201ENST00000526271 CCNT2O60583 730 aaKnown RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms