RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	ABHD14A	Q9BUJ0	271 aa		4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	CADM1	Q9BY67	442 aa	Known RBP	4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	OSGEPL1	Q9H4B0	414 aa		4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	DEF6	Q9H4E7	631 aa		4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	XAB2	Q9HCS7	855 aa	Known RBP	4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	LHX9	Q9NQ69	397 aa		4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	SLC35C2	Q9NQQ7	365 aa		4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	TBCCD1	Q9NVR7	557 aa		4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	ANO10	Q9NW15	660 aa		4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	PKD2L2	Q9NZM6	624 aa		4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	SELENON	Q9NZV5	590 aa		4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	CHMP5	Q9NZZ3	219 aa		4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	CTNNAL1	Q9UBT7	734 aa		4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	EPHA6	Q9UF33	1036 aa		4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	ZNHIT2	Q9UHR6	403 aa		4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	LNPEP	Q9UIQ6	1025 aa		4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	HAO1	Q9UJM8	370 aa		4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	SIRT4	Q9Y6E7	314 aa	Predicted RBP	4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	MEGF8	Q7Z7M0	2845 aa		4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	CPAMD8	Q8IZJ3	1885 aa		4.04	□□□□□ -1.76
VPS52-222	ENST00000495981	ZAN	Q9Y493	2812 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	TG	P01266	2768 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	PRKDC	P78527	4128 aa	Known RBP	4.03	□□□□□ -1.76
VPS52-222	ENST00000495981		A0A087X0T9	212 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	hCG_1809904	A0A1W2PP81	198 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981		A0A1W2PPE2	198 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981		A0A1W2PR64	198 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	OR5K3	A6NET4	321 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	OR5K4	A6NMS3	321 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	PDZK1P1	A8MUH7	402 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	ANKRD66	B4E2M5	251 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981		H3BMH7	237 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	CLIC1	O00299	241 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	VEGFD	O43915	354 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	PROSC	O94903	275 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	IPO7	O95373	1038 aa	Known RBP	4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	JCHAIN	P01591	159 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	GYPC	P04921	128 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	CAPN1	P07384	714 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	CCDC172	P0C7W6	258 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	FAM228B	P0C875	321 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	ZNF7	P17097	686 aa	Predicted RBP	4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	KLK2	P20151	261 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	SAT1	P21673	171 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	CA4	P22748	312 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	CPT2	P23786	658 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	CCNC	P24863	283 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	PTPN4	P29074	926 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	EEF1D	P29692	281 aa	Known RBP	4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	CDA	P32320	146 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	PTGER4	P35408	488 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	FOLR3	P41439	243 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	VPS41	P49754	854 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	CAMP	P49913	170 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	CCL11	P51671	97 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	ART1	P52961	327 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	KLHL30	Q0D2K2	578 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	RUNX2	Q13950	521 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	KRT81	Q14533	505 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	ATP13A5	Q4VNC0	1218 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	BOLA3	Q53S33	107 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	TDRD12	Q587J7	1177 aa	Known RBP	4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	ANKRD20A8P	Q5CZ79	823 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	C9orf152	Q5JTZ5	239 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	VWA5B1	Q5TIE3	1220 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	FAM69B	Q5VUD6	431 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	LCN10	Q6JVE6	187 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	FBXO42	Q6P3S6	717 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	KDELC1	Q6UW63	502 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	SUSD1	Q6UWL2	747 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	IL20RB	Q6UXL0	311 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	RHOU	Q7L0Q8	258 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	MRGPRE	Q86SM8	312 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	SYVN1	Q86TM6	617 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	TRIM73	Q86UV7	250 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	TGIF2LY	Q8IUE0	185 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	GHDC	Q8N2G8	530 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	PAQR4	Q8N4S7	273 aa	Predicted RBP	4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	POMGNT2	Q8NAT1	580 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	DDHD1	Q8NEL9	900 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	DNAAF1	Q8NEP3	725 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	OR52N4	Q8NGI2	321 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	IL17D	Q8TAD2	202 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	NSMCE1	Q8WV22	266 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	NEU4	Q8WWR8	484 aa	Predicted RBP	4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	RAPGEF5	Q92565	580 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	ZNF501	Q96CX3	271 aa	Predicted RBP	4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	TMCO6	Q96DC7	493 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	ARSG	Q96EG1	525 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	SAT2	Q96F10	170 aa	Predicted RBP	4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	ELMO2	Q96JJ3	720 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	RMDN2	Q96LZ7	410 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	FER1L6-AS2	Q96M78	137 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981		Q96MF0	132 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	LRFN5	Q96NI6	719 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	PAFAH2	Q99487	392 aa		4.03	□□□□□ -1.76
VPS52-222	ENST00000495981	TMEM121	Q9BTD3	319 aa		4.03	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms