RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SYNJ2BP-COX16A0A087WUM0 186 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 IQCMA0A1B0GVH7 501 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 EME2A4GXA9 379 aaPredicted RBP4.4□□□□□ -1.71
UPF3B-203ENST00000478840 MEI4A8MW99 385 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 SH2D1BO14796 132 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 SPAG6O75602 509 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 STK17BO94768 372 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 MFN2O95140 757 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 IGLV2-11P01706 119 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 PCCBP05166 539 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 FHP07954 510 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 MAP2K2P36507 400 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 MATKP42679 507 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 TSFMP43897 325 aaKnown RBP4.4□□□□□ -1.71
UPF3B-203ENST00000478840 IFNAR2P48551 515 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 RPL27P61353 136 aaKnown RBP4.4□□□□□ -1.71
UPF3B-203ENST00000478840 NAAAQ02083 359 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 BTG3Q14201 252 aaPredicted RBP4.4□□□□□ -1.71
UPF3B-203ENST00000478840 MTF1Q14872 753 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 ANKRD55Q3KP44 614 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 SLC39A4Q6P5W5 647 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 KDELC1Q6UW63 502 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 ZNF730Q6ZMV8 503 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 DPY19L2P2Q6ZN68 376 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 Q71RC1 249 aaPredicted RBP4.4□□□□□ -1.71
UPF3B-203ENST00000478840 ASRGL1Q7L266 308 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 CHMP1BQ7LBR1 199 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 CENPLQ8N0S6 344 aaPredicted RBP4.4□□□□□ -1.71
UPF3B-203ENST00000478840 GCNT2Q8N0V5 402 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 RAB42Q8N4Z0 105 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 BANPQ8N9N5 519 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 MLKLQ8NB16 471 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 OR9Q2Q8NGE9 314 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 OR2T34Q8NGX1 318 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 OR10T2Q8NGX3 314 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 RPLP0P6Q8NHW5 317 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 PNPLA2Q96AD5 504 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 SLC25A36Q96CQ1 311 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 ERP44Q9BS26 406 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 RBM24Q9BX46 236 aaKnown RBP4.4□□□□□ -1.71
UPF3B-203ENST00000478840 UBE2TQ9NPD8 197 aaPredicted RBP4.4□□□□□ -1.71
UPF3B-203ENST00000478840 GTSE1Q9NYZ3 720 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 KLHL8Q9P2G9 620 aaPredicted RBP4.4□□□□□ -1.71
UPF3B-203ENST00000478840 SLC6A5Q9Y345 797 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 MRPS18CQ9Y3D5 142 aaKnown RBP4.4□□□□□ -1.71
UPF3B-203ENST00000478840 ANGPTL3Q9Y5C1 460 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 ZHX2Q9Y6X8 837 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 KDRP35968 1356 aa4.4□□□□□ -1.71
UPF3B-203ENST00000478840 IGHV3-20A0A0C4DH32 117 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 OR5H15A6NDH6 313 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 E2F3O00716 465 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 MAPK13O15264 365 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 ANXA9O76027 345 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 IGHEP01854 428 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 RPLP0P05388 317 aaKnown RBP4.39□□□□□ -1.71
UPF3B-203ENST00000478840 MBL2P11226 248 aaPredicted RBP4.39□□□□□ -1.71
UPF3B-203ENST00000478840 AXLP30530 894 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 CHRNB4P30926 498 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 OTX2P32243 289 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 MTIF2P46199 727 aaKnown RBP4.39□□□□□ -1.71
UPF3B-203ENST00000478840 CRYBA2P53672 197 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 RPS4XP62701 263 aaKnown RBP4.39□□□□□ -1.71
UPF3B-203ENST00000478840 GNB1P62873 340 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 SHROOM1Q2M3G4 852 aaPredicted RBP4.39□□□□□ -1.71
UPF3B-203ENST00000478840 SGSM1Q2NKQ1 1148 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 ZNF699Q32M78 642 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 DCAF12Q5T6F0 453 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 DDI2Q5TDH0 399 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 SULT1C3Q6IMI6 304 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 NIPAL3Q6P499 406 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 ZER1Q7Z7L7 766 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 STKLD1Q8NE28 680 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 MRGPRDQ8TDS7 321 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 GIPC3Q8TF64 312 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 C11orf52Q96A22 123 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 GMPPAQ96IJ6 420 aaPredicted RBP4.39□□□□□ -1.71
UPF3B-203ENST00000478840 INPP4AQ96PE3 977 aaPredicted RBP4.39□□□□□ -1.71
UPF3B-203ENST00000478840 NLNQ9BYT8 704 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 POLR1EQ9GZS1 481 aaKnown RBP4.39□□□□□ -1.71
UPF3B-203ENST00000478840 RAB33BQ9H082 229 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 WDR76Q9H967 626 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 TUBGCP4Q9UGJ1 667 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 PPP1R3CQ9UQK1 317 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 TNFRSF18Q9Y5U5 241 aa4.39□□□□□ -1.71
UPF3B-203ENST00000478840 LOC390937A0A1W2PQ73 354 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 GPR89AB7ZAQ6 455 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 K7EQD1 137 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 MCF2LO15068 1137 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 INPP4BO15327 924 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 TBX19O60806 448 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 OR4F21O95013 312 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 GPR89BP0CG08 455 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 SGSHP51688 502 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 ABCE1P61221 599 aaKnown RBP4.38□□□□□ -1.71
UPF3B-203ENST00000478840 HERVK_113P63132 956 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 ERVK-8P63133 956 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 CYCSP99999 105 aaKnown RBP4.38□□□□□ -1.71
UPF3B-203ENST00000478840 HNRNPDQ14103 355 aaKnown RBP4.38□□□□□ -1.71
UPF3B-203ENST00000478840 GCKRQ14397 625 aa4.38□□□□□ -1.71
UPF3B-203ENST00000478840 RFTN1Q14699 578 aaPredicted RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms