RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 PORP16435 677 aaPredicted RBP13.81□□□□□ -0.2
COL9A3-209ENST00000469852 PRPS1L1P21108 318 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 GPX3P22352 226 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 CXADRP78310 365 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 PHC1P78364 1004 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 VAC14Q08AM6 782 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 ELAVL1Q15717 326 aaKnown RBP13.81□□□□□ -0.2
COL9A3-209ENST00000469852 GSTA3Q16772 222 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 PDCD4Q53EL6 469 aaKnown RBP13.81□□□□□ -0.2
COL9A3-209ENST00000469852 PAOXQ6QHF9 649 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 NDUFAF7Q7L592 441 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 CCDC116Q8IYX3 515 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 ST13P4Q8IZP2 240 aaPredicted RBP13.81□□□□□ -0.2
COL9A3-209ENST00000469852 ZNF321PQ8N8H1 164 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 SIMC1Q8NDZ2 872 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 NFAM1Q8NET5 270 aaPredicted RBP13.81□□□□□ -0.2
COL9A3-209ENST00000469852 NACC2Q96BF6 587 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 MTERF3Q96E29 417 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 ZNF764Q96H86 408 aaPredicted RBP13.81□□□□□ -0.2
COL9A3-209ENST00000469852 IMMP1LQ96LU5 166 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 DGAT2Q96PD7 388 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 CLMPQ9H6B4 373 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 ADAP2Q9NPF8 381 aa13.81□□□□□ -0.2
COL9A3-209ENST00000469852 SDR39U1Q9NRG7 319 aaPredicted RBP13.81□□□□□ -0.2
COL9A3-209ENST00000469852 SAGE2PA6NJ88 616 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 C17orf105B2RV13 164 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 PCDH17O14917 1159 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 PDPK1O15530 556 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 OR10H2O60403 315 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 SNX3O60493 162 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 DNAJB5O75953 348 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 DDAH2O95865 285 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 CSNK2A2P19784 350 aaPredicted RBP13.8□□□□□ -0.2
COL9A3-209ENST00000469852 NCF2P19878 526 aaPredicted RBP13.8□□□□□ -0.2
COL9A3-209ENST00000469852 FRKP42685 505 aaPredicted RBP13.8□□□□□ -0.2
COL9A3-209ENST00000469852 DGKQP52824 942 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 UCNP55089 124 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 WNT3P56703 355 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 SLC26A5P58743 744 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 PLIN5Q00G26 463 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 MGAT2Q10469 447 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 PGS1Q32NB8 556 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 SPANXN4Q5MJ08 99 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 DCAF10Q5QP82 559 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 OR4F3Q6IEY1 312 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 FAM111BQ6SJ93 734 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 CPLX4Q7Z7G2 160 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 LRRC25Q8N386 305 aaPredicted RBP13.8□□□□□ -0.2
COL9A3-209ENST00000469852 ZSCAN1Q8NBB4 408 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 ADCY4Q8NFM4 1077 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 OR9A2Q8NGT5 310 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 THAP4Q8WY91 577 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 COQ8BQ96D53 544 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 BBC3Q96PG8 261 aaPredicted RBP13.8□□□□□ -0.2
COL9A3-209ENST00000469852 EPN3Q9H201 632 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 GLIPR2Q9H4G4 154 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 ANKRA2Q9H9E1 313 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 ZNF223Q9UK11 482 aaPredicted RBP13.8□□□□□ -0.2
COL9A3-209ENST00000469852 PSME2Q9UL46 239 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 ENTPD4Q9Y227 616 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 POLHQ9Y253 713 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 MAN2B2Q9Y2E5 1009 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 ZNF780BQ9Y6R6 833 aa13.8□□□□□ -0.2
COL9A3-209ENST00000469852 DOCK10Q96BY6 2186 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 NSG1A0A0A6YYJ2 146 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 PEX12O00623 359 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 SLC22A3O75751 556 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 HPP00738 406 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 CLPSP04118 112 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 ATP1B1P05026 303 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 TNNI3P19429 210 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 NT5EP21589 574 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 MRPL19P49406 292 aaKnown RBP13.79□□□□□ -0.2
COL9A3-209ENST00000469852 GPR143P51810 404 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 PGDP52209 483 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 NCBP2P52298 156 aaKnown RBP eCLIP13.79□□□□□ -0.2
COL9A3-209ENST00000469852 MRPS35P82673 323 aaKnown RBP13.79□□□□□ -0.2
COL9A3-209ENST00000469852 UBAP2LQ14157 1087 aaKnown RBP13.79□□□□□ -0.2
COL9A3-209ENST00000469852 RPS6KA2Q15349 733 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 PRICKLE4Q2TBC4 344 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 FAM174BQ3ZCQ3 159 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 CPTPQ5TA50 214 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 ZNF551Q7Z340 670 aaPredicted RBP13.79□□□□□ -0.2
COL9A3-209ENST00000469852 R3HCC1LQ7Z5L2 792 aaKnown RBP13.79□□□□□ -0.2
COL9A3-209ENST00000469852 CAMKMTQ7Z624 323 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 PIGWQ7Z7B1 504 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 FUNDC1Q8IVP5 155 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 MIER2Q8N344 545 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 KIF2BQ8N4N8 673 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 APCDD1LQ8NCL9 501 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 SLC2A12Q8TD20 617 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 SNRNP27Q8WVK2 155 aaKnown RBP13.79□□□□□ -0.2
COL9A3-209ENST00000469852 KAT2AQ92830 837 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 TESCQ96BS2 214 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 RBM18Q96H35 190 aaKnown RBP13.79□□□□□ -0.2
COL9A3-209ENST00000469852 AMDHD1Q96NU7 426 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 IP6K3Q96PC2 410 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 BBS4Q96RK4 519 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 LPAR4Q99677 370 aa13.79□□□□□ -0.2
COL9A3-209ENST00000469852 TUBB6Q9BUF5 446 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms