RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 SEC22BO75396 215 aa16.54■□□□□ 0.24
COL7A1-205ENST00000465238 SEC24DO94855 1032 aaPredicted RBP16.54■□□□□ 0.24
COL7A1-205ENST00000465238 WDPCPO95876 746 aa16.54■□□□□ 0.24
COL7A1-205ENST00000465238 PPP2R1BP30154 601 aa16.54■□□□□ 0.24
COL7A1-205ENST00000465238 TDGF1P3P51864 188 aa16.54■□□□□ 0.24
COL7A1-205ENST00000465238 TRA2BP62995 288 aaKnown RBP16.54■□□□□ 0.24
COL7A1-205ENST00000465238 SUN3Q8TAQ9 357 aa16.54■□□□□ 0.24
COL7A1-205ENST00000465238 LPAR4Q99677 370 aa16.54■□□□□ 0.24
COL7A1-205ENST00000465238 ALOXE3Q9BYJ1 711 aa16.54■□□□□ 0.24
COL7A1-205ENST00000465238 TUBB1Q9H4B7 451 aa16.54■□□□□ 0.24
COL7A1-205ENST00000465238 PTGDR2Q9Y5Y4 395 aa16.54■□□□□ 0.24
COL7A1-205ENST00000465238 MYO7BQ6PIF6 2116 aa16.54■□□□□ 0.24
COL7A1-205ENST00000465238 OR5H15A6NDH6 313 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 PIP5K1BO14986 540 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 LDB3O75112 727 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 AIFM1O95831 613 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 CRYABP02511 175 aaKnown RBP16.53■□□□□ 0.24
COL7A1-205ENST00000465238 TIA1P31483 386 aaKnown RBP eCLIP16.53■□□□□ 0.24
COL7A1-205ENST00000465238 RPL14P50914 215 aaKnown RBP16.53■□□□□ 0.24
COL7A1-205ENST00000465238 SERTAD2Q14140 314 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 HSP90B2PQ58FF3 399 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 PAPD4Q6PIY7 484 aaKnown RBP16.53■□□□□ 0.24
COL7A1-205ENST00000465238 ZNF781Q8N8C0 355 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 DNAJB8Q8NHS0 232 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 FAM76AQ8TAV0 307 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 DYDC1Q8WWB3 177 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 TM4SF18Q96CE8 201 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 METTL2AQ96IZ6 378 aaKnown RBP16.53■□□□□ 0.24
COL7A1-205ENST00000465238 CCT7Q99832 543 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 FAIM2Q9BWQ8 316 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 C20orf27Q9GZN8 174 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 LRTM1Q9HBL6 345 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 PNO1Q9NRX1 252 aaKnown RBP16.53■□□□□ 0.24
COL7A1-205ENST00000465238 THAP1Q9NVV9 213 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 C1orf109Q9NX04 203 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 SIRT5Q9NXA8 310 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 TEX10Q9NXF1 929 aaPredicted RBP16.53■□□□□ 0.24
COL7A1-205ENST00000465238 STMN3Q9NZ72 180 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 CCL27Q9Y4X3 112 aa16.53■□□□□ 0.24
COL7A1-205ENST00000465238 GLOD5A6NK44 160 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 A8MUA0 341 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 ATP8B1O43520 1251 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 ZG16O60844 167 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 SKAP2O75563 359 aaPredicted RBP16.52■□□□□ 0.24
COL7A1-205ENST00000465238 PRKRAO75569 313 aaKnown RBP16.52■□□□□ 0.24
COL7A1-205ENST00000465238 RASAL1O95294 804 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 F10P00742 488 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 IFNA16P05015 189 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 ANXA4P09525 319 aaPredicted RBP16.52■□□□□ 0.24
COL7A1-205ENST00000465238 PRPH2P23942 346 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 RAE1P78406 368 aaKnown RBP16.52■□□□□ 0.24
COL7A1-205ENST00000465238 ID2Q02363 134 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 BIKQ13323 160 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 NDUFAF5Q5TEU4 345 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 PLAG1Q6DJT9 500 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 OR52E8Q6IFG1 317 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 GALNT18Q6P9A2 607 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 Q6ZSR9 355 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 FJX1Q86VR8 437 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 OR4N5Q8IXE1 308 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 RELTQ969Z4 430 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 ANKRD9Q96BM1 317 aaPredicted RBP16.52■□□□□ 0.24
COL7A1-205ENST00000465238 SORT1Q99523 831 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 EBPLQ9BY08 206 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 INTS9Q9NV88 658 aaKnown RBP16.52■□□□□ 0.24
COL7A1-205ENST00000465238 ABI3Q9P2A4 366 aa16.52■□□□□ 0.24
COL7A1-205ENST00000465238 MYOCOSA0A1B0GUC4 107 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 C1orf226A1L170 272 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 NPIPB8E9PQR5 432 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 TGFBR3LH3BV60 316 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 FGF17O60258 216 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 PRAMEF2O60811 474 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 GPR75O95800 540 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 TNNI3P19429 210 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 KCNK10P57789 538 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 TAS2R50P59544 299 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 FOLH1Q04609 750 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 EXT1Q16394 746 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 BTBD16Q32M84 506 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 GALNTL6Q49A17 601 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 C1QL3Q5VWW1 255 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 NOXRED1Q6NXP6 359 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 GFRALQ6UXV0 394 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 TICAM1Q8IUC6 712 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 OR2T11Q8NH01 316 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 ZNF75CPQ92670 426 aaPredicted RBP16.51■□□□□ 0.23
COL7A1-205ENST00000465238 C11orf24Q96F05 449 aaPredicted RBP16.51■□□□□ 0.23
COL7A1-205ENST00000465238 ZNF354BQ96LW1 612 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 PPP3R2Q96LZ3 170 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 HAO1Q9UJM8 370 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 ENTPD4Q9Y227 616 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 DLGAP4Q9Y2H0 992 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 POLR3HQ9Y535 204 aaPredicted RBP16.51■□□□□ 0.23
COL7A1-205ENST00000465238 PCDHA9Q9Y5H5 950 aa16.51■□□□□ 0.23
COL7A1-205ENST00000465238 WASHC1A8K0Z3 465 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 A8MUI8 341 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 KLF11O14901 512 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 PGRMC2O15173 223 aa16.5■□□□□ 0.23
COL7A1-205ENST00000465238 SNNO75324 88 aaPredicted RBP16.5■□□□□ 0.23
COL7A1-205ENST00000465238 PIK3R1P27986 724 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms