RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 MST1P26927 711 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 EPHA3P29320 983 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 SERPINB1P30740 379 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 HNRNPH1P31943 449 aaKnown RBP16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 PHEXP78562 749 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 CSTF3Q12996 717 aaKnown RBP16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 METTL21CQ5VZV1 264 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 TRIM46Q7Z4K8 759 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 LAS2Q8IYD9 372 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 LGI4Q8N135 537 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 FAM98AQ8NCA5 519 aaKnown RBP16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 MDS2Q8NDY4 140 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 CEP70Q8NHQ1 597 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 WDR20Q8TBZ3 569 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 SELENOMQ8WWX9 145 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 OR52B2Q96RD2 323 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 NPLQ9BXD5 320 aaPredicted RBP16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 HES7Q9BYE0 225 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 DEFB126Q9BYW3 111 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 WDR55Q9H6Y2 383 aaPredicted RBP16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 MRGBPQ9NV56 204 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 LRFN1Q9P244 771 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 MRPS33Q9Y291 106 aaKnown RBP16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 IGKV3D-11A0A0A0MRZ8 115 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 NPIPB8E9PQR5 432 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 SLC28A1O00337 649 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 RGS14O43566 566 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 CCDC22O60826 627 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 RAB38P57729 211 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 TGM3Q08188 693 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 SLC13A2Q13183 592 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 RUNX2Q13950 521 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 LSM12Q3MHD2 195 aaKnown RBP16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 FAM219BQ5XKK7 198 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 ZNF787Q6DD87 383 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 SLC25A25Q6KCM7 469 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 OGFOD2Q6N063 350 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 GBP7Q8N8V2 638 aaPredicted RBP16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 OR2L5Q8NG80 312 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 ADAMTS18Q8TE60 1221 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 PPP1R36Q96LQ0 422 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 BRF2Q9HAW0 419 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 PRTFDC1Q9NRG1 225 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 PNO1Q9NRX1 252 aaKnown RBP16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 HEY2Q9UBP5 337 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 SUCOQ9UBS9 1254 aaKnown RBP16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 ADGRE2Q9UHX3 823 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 ZNF490Q9ULM2 529 aaPredicted RBP16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 PPT2Q9UMR5 302 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 PTGDR2Q9Y5Y4 395 aa16.8■□□□□ 0.28
SQSTM1-204ENST00000453046 GOLGA8QA0A0J9YX86 632 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 GOLGA8OA6NCC3 632 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 GOLGA8NF8WBI6 632 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 CDK2AP1O14519 115 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 FCHO1O14526 889 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 RSL1D1O76021 490 aaKnown RBP16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 MYO1DO94832 1006 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 SP1P08047 785 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 LINC00032P0C843 101 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 PRPH2P23942 346 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 TPP2P29144 1249 aaPredicted RBP16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 CYB561P49447 251 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 CLCN2P51788 898 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 CASP6P55212 293 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 HSD17B7P56937 341 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 IRX1P78414 480 aaPredicted RBP16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 ALDH6A1Q02252 535 aaKnown RBP16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 MAPKAPK3Q16644 382 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 ATP6AP1LQ52LC2 224 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 FAM91A1Q658Y4 838 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 NXNQ6DKJ4 435 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 LARP4Q71RC2 724 aaKnown RBP eCLIP16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 GALNTL5Q7Z4T8 443 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 FAM47BQ8NA70 645 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 OR7G3Q8NG95 312 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 RELTQ969Z4 430 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 TMEM125Q96AQ2 219 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 TUBGCP3Q96CW5 907 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 SCMH1Q96GD3 660 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 PPP3R2Q96LZ3 170 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 C3orf30Q96M34 536 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 LRRC37BQ96QE4 947 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 SERINC2Q96SA4 455 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 SH3BGRL2Q9UJC5 107 aa16.79■□□□□ 0.28
SQSTM1-204ENST00000453046 TRBV11-1A0A0K0K1C0 115 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 E9PBE3 544 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 EBAG9O00559 213 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 SLC25A12O75746 678 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 NEURL1O76050 574 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 PDYNP01213 254 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 LBPP18428 481 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 DCTP40126 519 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 PIK3CBP42338 1070 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 MTTPP55157 894 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 IMPG1Q17R60 797 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 SMU1Q2TAY7 513 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 ADPRMQ3LIE5 342 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 ADNP2Q6IQ32 1131 aa16.78■□□□□ 0.28
SQSTM1-204ENST00000453046 ABHD17CQ6PCB6 329 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms