RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 NRSN2Q9GZP1 204 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 IKZF5Q9H5V7 419 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 CUTCQ9NTM9 273 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 KLK13Q9UKR3 277 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 OAZ3Q9UMX2 235 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 WASF3Q9UPY6 502 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 MRPS2Q9Y399 296 aaKnown RBP12.67□□□□□ -0.38
LIMS1-204ENST00000409441 PCDHGA3Q9Y5H0 932 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 SLC22A7Q9Y694 548 aa12.67□□□□□ -0.38
LIMS1-204ENST00000409441 DLGAP1O14490 977 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 RFXANKO14593 260 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 MED26O95402 600 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 CLPTM1O96005 669 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 ZNF888P0CJ79 500 aaPredicted RBP12.66□□□□□ -0.38
LIMS1-204ENST00000409441 SMIM10L1P0DMW3 83 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 ZNF28P17035 718 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 SPINK2P20155 84 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 MYF6P23409 242 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 PTPN6P29350 595 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 RBMS1P29558 406 aaKnown RBP12.66□□□□□ -0.38
LIMS1-204ENST00000409441 GCGRP47871 477 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 PLA2G16P53816 162 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 SNRPNP63162 240 aaKnown RBP12.66□□□□□ -0.38
LIMS1-204ENST00000409441 LRRC74AQ0VAA2 488 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 MERTKQ12866 999 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 KRT80Q6KB66 452 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 DNAJC14Q6Y2X3 702 aaPredicted RBP12.66□□□□□ -0.38
LIMS1-204ENST00000409441 TTLL10Q6ZVT0 673 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 ABHD13Q7L211 337 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 CAMKMTQ7Z624 323 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 UBE3DQ7Z6J8 389 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 SLC38A9Q8NBW4 561 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 OR2L5Q8NG80 312 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 ZCCHC10Q8TBK6 192 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 CHTF18Q8WVB6 975 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 FIG4Q92562 907 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 FAM162AQ96A26 154 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 RGMAQ96B86 450 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 SMIM10Q96HG1 83 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 C10orf90Q96M02 699 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 ADI1Q9BV57 179 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 SPTBN2O15020 2390 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 MDC1Q14676 2089 aaKnown RBP12.66□□□□□ -0.38
LIMS1-204ENST00000409441 PTPRBP23467 1997 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 TRABD2BA6NFA1 517 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 EVPLLA8MZ36 301 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 ERI3O43414 337 aaKnown RBP12.66□□□□□ -0.38
LIMS1-204ENST00000409441 H6PDO95479 791 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 HBQ1P09105 142 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 ALOX12P18054 663 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 BTN3A2P78410 334 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 TGM3Q08188 693 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 FAM53BQ14153 422 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 GK3PQ14409 553 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 UGT8Q16880 541 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 SLC36A3Q495N2 470 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 GTDC1Q4AE62 458 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 ABHD17CQ6PCB6 329 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 SERPINA11Q86U17 422 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 SRFBP1Q8NEF9 429 aaKnown RBP12.66□□□□□ -0.38
LIMS1-204ENST00000409441 GAL3ST3Q96A11 431 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 CLIP3Q96DZ5 547 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 TSC22D3Q99576 134 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 C17orf62Q9BQA9 187 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 INPP5KQ9BT40 448 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 SPATA9Q9BWV2 254 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 EBPLQ9BY08 206 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 ULBP3Q9BZM4 244 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 B3GNT4Q9C0J1 378 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 PRDM7Q9NQW5 492 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 DCAF13Q9NV06 445 aaKnown RBP12.66□□□□□ -0.38
LIMS1-204ENST00000409441 SMPD3Q9NY59 655 aaPredicted RBP12.66□□□□□ -0.38
LIMS1-204ENST00000409441 AHSPQ9NZD4 102 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 DHCR7Q9UBM7 475 aaKnown RBP12.66□□□□□ -0.38
LIMS1-204ENST00000409441 NDOR1Q9UHB4 597 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 PCDHGB4Q9UN71 923 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 SRPK3Q9UPE1 567 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 MYRFQ9Y2G1 1151 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 PCDHGB5Q9Y5G0 923 aa12.66□□□□□ -0.38
LIMS1-204ENST00000409441 SPTBP11277 2137 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 A0A0A6YYC8 382 aaPredicted RBP12.65□□□□□ -0.38
LIMS1-204ENST00000409441 A0A0G2JN53 185 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 H3BNH8 94 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 I3L1I5 382 aaPredicted RBP12.65□□□□□ -0.38
LIMS1-204ENST00000409441 PDLIM1O00151 329 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 FOXS1O43638 330 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 CREG1O75629 220 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 LRATO95237 230 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 B3GALT4O96024 378 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 HPRP00739 348 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 COX7A2P14406 83 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 PPIBP23284 216 aaKnown RBP12.65□□□□□ -0.38
LIMS1-204ENST00000409441 SOX11P35716 441 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 HPCAL1P37235 193 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 WNT3P56703 355 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 RTP5Q14D33 572 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 DEFB134Q4QY38 66 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 ANXA8L1Q5VT79 327 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 C1orf189Q5VU69 101 aa12.65□□□□□ -0.38
LIMS1-204ENST00000409441 OR4C11Q6IEV9 310 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms