RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 ZNF607Q96SK3 696 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 MAPKAP1Q9BPZ7 522 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 TOR3AQ9H497 397 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 SMURF2Q9HAU4 748 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 ZCCHC3Q9NUD5 404 aaKnown RBP13.4□□□□□ -0.26
LIG3-205ENST00000585941 FAM118AQ9NWS6 357 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 MAGED1Q9Y5V3 778 aaPredicted RBP13.4□□□□□ -0.26
LIG3-205ENST00000585941 U3KQV3 271 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 EYSQ5T1H1 3165 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 LILRA5A6NI73 299 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 GLOD5A6NK44 160 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 TMEM229AB2RXF0 380 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 H0YGG7 62 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 HMGN4O00479 90 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 EMC8O43402 210 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 CPN2P22792 545 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 IGFBP5P24593 272 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 ARF3P61204 181 aaPredicted RBP13.4□□□□□ -0.26
LIG3-205ENST00000585941 TMEM179BQ7Z7N9 219 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 C8orf59Q8N0T1 100 aaPredicted RBP13.4□□□□□ -0.26
LIG3-205ENST00000585941 ZNF786Q8N393 782 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 SUN3Q8TAQ9 357 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 UCN3Q969E3 161 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 FBXL20Q96IG2 436 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 SPATA5L1Q9BVQ7 753 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 TMEM121BQ9BXQ6 578 aaPredicted RBP13.4□□□□□ -0.26
LIG3-205ENST00000585941 KCMF1Q9P0J7 381 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 RAB23Q9ULC3 237 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 SNX11Q9Y5W9 270 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 SLCO1B1Q9Y6L6 691 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 STK25O00506 426 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 AXIN1O15169 862 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 SLC16A6O15403 523 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 P2RX6O15547 441 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 SERPINB7O75635 380 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 UBXN7O94888 489 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 PGM3O95394 542 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 BCHEP06276 602 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 PABPC4LP0CB38 370 aaKnown RBP13.39□□□□□ -0.27
LIG3-205ENST00000585941 ITGAMP11215 1152 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 MATN1P21941 496 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 CXCL12P48061 93 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 LSSP48449 732 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 PXNP49023 591 aaPredicted RBP13.39□□□□□ -0.27
LIG3-205ENST00000585941 KCNC4Q03721 635 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 ZIK1Q3SY52 487 aaPredicted RBP13.39□□□□□ -0.27
LIG3-205ENST00000585941 PRAMEF8Q5VWM4 474 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 PRAMEF7Q5VXH5 474 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 KRT73Q86Y46 540 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 CCDC116Q8IYX3 515 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 LMX1AQ8TE12 382 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 TMEM19Q96HH6 336 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 HSPA12BQ96MM6 686 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 ZNF681Q96N22 645 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 ZNF300Q96RE9 604 aaPredicted RBP13.39□□□□□ -0.27
LIG3-205ENST00000585941 CCDC3Q9BQI4 270 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 NPLQ9BXD5 320 aaPredicted RBP13.39□□□□□ -0.27
LIG3-205ENST00000585941 CXorf56Q9H5V9 222 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 EVA1BQ9NVM1 165 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 VNN3Q9NY84 501 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 NDUFAF4Q9P032 175 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 TMEFF2Q9UIK5 374 aaPredicted RBP13.39□□□□□ -0.27
LIG3-205ENST00000585941 DAPP1Q9UN19 280 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 FAM32AQ9Y421 112 aaKnown RBP13.39□□□□□ -0.27
LIG3-205ENST00000585941 SLC22A7Q9Y694 548 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 KNL1Q8NG31 2342 aa13.39□□□□□ -0.27
LIG3-205ENST00000585941 GON4LQ3T8J9 2241 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 A0A087WXM4 84 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 LOC105369274A0A096LPK9 316 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 LOC102723532A0A0G2JNH3 316 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 TRIM64A6NGJ6 449 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 LMO7DNF2Z398 122 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 ASNA1O43681 348 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 B4GALT2O60909 372 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 UGT2B11O75310 529 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 PRKRAO75569 313 aaKnown RBP13.38□□□□□ -0.27
LIG3-205ENST00000585941 DNAJB5O75953 348 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 OPN1SWP03999 348 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 TFAP2AP05549 437 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 LIM2P55344 173 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 NXPH1P58417 271 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 RPS26P62854 115 aaKnown RBP13.38□□□□□ -0.27
LIG3-205ENST00000585941 SKP1P63208 163 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 KCNAB2Q13303 367 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 DEFB134Q4QY38 66 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 RNF220Q5VTB9 566 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 KDM4DQ6B0I6 523 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 FRMPD2BQ6IN97 320 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 NIPAL1Q6NVV3 410 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 SZRD1Q7Z422 152 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 THAP5Q7Z6K1 395 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 HS3ST5Q8IZT8 346 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 OR4N4Q8N0Y3 316 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 LRRC25Q8N386 305 aaPredicted RBP13.38□□□□□ -0.27
LIG3-205ENST00000585941 ARL14Q8N4G2 192 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 DEFB119Q8N690 84 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 CSNK1A1LQ8N752 337 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 PIK3C3Q8NEB9 887 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 OR4K14Q8NGD5 310 aa13.38□□□□□ -0.27
LIG3-205ENST00000585941 BBS10Q8TAM1 723 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms