RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 BTAF1O14981 1849 aa3.65□□□□□ -1.82
SMCHD1-208ENST00000583344 SLX4Q8IY92 1834 aa3.65□□□□□ -1.82
SMCHD1-208ENST00000583344 A0A1W2PP11 408 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 hCG_1809904A0A1W2PP81 198 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 A0A1W2PPE2 198 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 A0A1W2PR64 198 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 TCRBV9S1A1TA0A576 114 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 BCLAF3A2AJT9 711 aaKnown RBP3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 FAM159BA6NKW6 160 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 TTC36A6NLP5 189 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 PI4K2BG5E9Z4 385 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 APOC4-APOC2K7ER74 178 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 COPEO14579 308 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 SLC7A4O43246 635 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 MED7O43513 233 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 CST8O60676 142 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 STAM2O75886 525 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 PDE9AO76083 593 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 TRUB2O95900 331 aaKnown RBP3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 CCNE2O96020 404 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 GSRP00390 522 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 ASS1P00966 412 aaKnown RBP3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 CALCAP01258 141 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 APOC2P02655 101 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 RB1P06400 928 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 THEGLP0DJG4 465 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 CPA3P15088 417 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 TCF4P15884 667 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 IL7RP16871 459 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 VCLP18206 1134 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 TNNI1P19237 187 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 MSH3P20585 1137 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 BGNP21810 368 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 ARL2P36404 184 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 ELK3P41970 407 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 SSR1P43307 286 aaKnown RBP3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 MAGEA3P43357 314 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 NRIP1P48552 1158 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 LIG4P49917 911 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 OTUD4Q01804 1114 aaKnown RBP3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 BST1Q10588 318 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 OVGP1Q12889 678 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 MAD2L1Q13257 205 aaPredicted RBP3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 STX3Q13277 289 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 MED21Q13503 144 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 CAMK2DQ13557 499 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 TFDP2Q14188 446 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 IRF3Q14653 427 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 KCNJ11Q14654 390 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 UGCGQ16739 394 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 KBTBD12Q3ZCT8 623 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 TEX44Q53QW1 395 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 XKR3Q5GH77 459 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 C9orf152Q5JTZ5 239 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 RABGAP1LQ5R372 815 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 TXNRD3NBQ6F5E7 133 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 KRT80Q6KB66 452 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 DCUN1D2Q6PH85 259 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 DCLRE1AQ6PJP8 1040 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 TMEM270Q6UE05 265 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 PLXDC2Q6UX71 529 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 CDHR3Q6ZTQ4 885 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 DENND5BQ6ZUT9 1274 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 KBTBD6Q86V97 674 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 CRLF3Q8IUI8 442 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 WDR49Q8IV35 697 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 NUDCD3Q8IVD9 361 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 LINC00346Q8IVM7 164 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 MARVELD2Q8N4S9 558 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 OR8H1Q8NGG4 311 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 FAM81AQ8TBF8 368 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 ACTL9Q8TC94 416 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 PRPF31Q8WWY3 499 aaKnown RBP3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 ITFG2Q969R8 447 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 SLC22A18Q96BI1 424 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 OPTNQ96CV9 577 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 RMDN1Q96DB5 314 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 SIPA1Q96FS4 1042 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 CEP170P1Q96L14 293 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 LINC00479Q96M42 142 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 FAM111AQ96PZ2 611 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 GCNAQ96QF7 691 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 NDNQ99608 321 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 CITED2Q99967 270 aaPredicted RBP3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 CENPKQ9BS16 269 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 GCOM2Q9BZD3 368 aaPredicted RBP3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 NMUR2Q9GZQ4 415 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 TDRD3Q9H7E2 651 aaKnown RBP3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 SLC38A10Q9HBR0 1119 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 PFDN4Q9NQP4 134 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 XPNPEP1Q9NQW7 623 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 GIMAP4Q9NUV9 329 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 ATXN10Q9UBB4 475 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 CIDEBQ9UHD4 219 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 DCDC2Q9UHG0 476 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 SLC7A8Q9UHI5 535 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 XPO7Q9UIA9 1087 aaKnown RBP3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 MKLN1Q9UL63 735 aa3.65□□□□□ -1.83
SMCHD1-208ENST00000583344 TMCO1Q9UM00 188 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms