RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ZNRF1Q8ND25 227 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 SETD6Q8TBK2 473 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 CKAP2Q8WWK9 683 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 CORO2AQ92828 525 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 SGF29Q96ES7 293 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 RANBP9Q96S59 729 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 EBF4Q9BQW3 602 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 AP1M1Q9BXS5 423 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 TIGARQ9NQ88 270 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 SPG21Q9NZD8 308 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 DNAJB9Q9UBS3 223 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 CFDP1Q9UEE9 299 aaPredicted RBP1.98□□□□□ -2.09
VPS35-207ENST00000568191 ETV7Q9Y603 341 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 POMT1Q9Y6A1 747 aa1.98□□□□□ -2.09
VPS35-207ENST00000568191 TRIM49D1C9J1S8 452 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 KBTBD13C9JR72 458 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 TIMM44O43615 452 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 NUDT14O95848 222 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 ACTL6AO96019 429 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 PROS1P07225 676 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 GP5P40197 560 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 SLC7A2P52569 658 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 ZNF133P52736 654 aaPredicted RBP1.97□□□□□ -2.09
VPS35-207ENST00000568191 NDST1P52848 882 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 STX17P56962 302 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 FKBP1BP68106 108 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 SLC17A1Q14916 467 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 PSMD6Q15008 389 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 PM20D1Q6GTS8 502 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 SNRNP48Q6IEG0 339 aaKnown RBP1.97□□□□□ -2.09
VPS35-207ENST00000568191 AQP12AQ8IXF9 295 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 GOLGA5Q8TBA6 731 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 SETD7Q8WTS6 366 aaKnown RBP1.97□□□□□ -2.09
VPS35-207ENST00000568191 TFB1MQ8WVM0 346 aaKnown RBP1.97□□□□□ -2.09
VPS35-207ENST00000568191 SLCO4A1Q96BD0 722 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 FAM122AQ96E09 287 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 ZNF285Q96NJ3 590 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 ATG101Q9BSB4 218 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 WWP1Q9H0M0 922 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 ZCCHC17Q9NP64 241 aaKnown RBP1.97□□□□□ -2.09
VPS35-207ENST00000568191 GPR173Q9NS66 373 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 ZNF446Q9NWS9 450 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 PLEK2Q9NYT0 353 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 ABCG2Q9UNQ0 655 aa1.97□□□□□ -2.09
VPS35-207ENST00000568191 IGKV6-21A0A0C4DH24 114 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 FRG2CA6NGY1 282 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 EPOPA6NHQ4 379 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 PDXKO00764 312 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 STAM2O75886 525 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 P0C879 139 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 FOSL2P15408 326 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 IFNAR1P17181 557 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 IER3P46695 156 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 CCR4P51679 360 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 ARHGDIAP52565 204 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 PAX2Q02962 417 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 CD47Q08722 323 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 C9orf129Q5T035 196 aaKnown RBP1.96□□□□□ -2.1
VPS35-207ENST00000568191 ARMC3Q5W041 872 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 WSCD1Q658N2 575 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 ZNF530Q6P9A1 599 aaPredicted RBP1.96□□□□□ -2.1
VPS35-207ENST00000568191 C17orf64Q86WR6 236 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 THNSL1Q8IYQ7 743 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 OR1K1Q8NGR3 316 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 MR1Q95460 341 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 ZMAT2Q96NC0 199 aaKnown RBP1.96□□□□□ -2.1
VPS35-207ENST00000568191 GBP5Q96PP8 586 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 ERGIC2Q96RQ1 377 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 ZNF559Q9BR84 538 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 LRRC2Q9BYS8 371 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 RNF41Q9H4P4 317 aaPredicted RBP1.96□□□□□ -2.1
VPS35-207ENST00000568191 ZNF665Q9H7R5 613 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 MRPL17Q9NRX2 175 aaKnown RBP1.96□□□□□ -2.1
VPS35-207ENST00000568191 RAI14Q9P0K7 980 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 KLHL21Q9UJP4 597 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 CCPG1Q9ULG6 757 aa1.96□□□□□ -2.1
VPS35-207ENST00000568191 TRABD2BA6NFA1 517 aa1.95□□□□□ -2.1
VPS35-207ENST00000568191 SAP18O00422 153 aaKnown RBP1.95□□□□□ -2.1
VPS35-207ENST00000568191 PSMD3O43242 534 aa1.95□□□□□ -2.1
VPS35-207ENST00000568191 CSO75390 466 aaKnown RBP1.95□□□□□ -2.1
VPS35-207ENST00000568191 CSDE1O75534 798 aaKnown RBP1.95□□□□□ -2.1
VPS35-207ENST00000568191 GOT2P00505 430 aaKnown RBP1.95□□□□□ -2.1
VPS35-207ENST00000568191 RLN1P04808 185 aa1.95□□□□□ -2.1
VPS35-207ENST00000568191 EZRP15311 586 aaKnown RBP1.95□□□□□ -2.1
VPS35-207ENST00000568191 MAGEB1P43366 347 aa1.95□□□□□ -2.1
VPS35-207ENST00000568191 CXCL6P80162 114 aa1.95□□□□□ -2.1
VPS35-207ENST00000568191 AKAP17AQ02040 695 aaKnown RBP1.95□□□□□ -2.1
VPS35-207ENST00000568191 TGIF1Q15583 401 aa1.95□□□□□ -2.1
VPS35-207ENST00000568191 GCNT7Q6ZNI0 430 aa1.95□□□□□ -2.1
VPS35-207ENST00000568191 CYP4V2Q6ZWL3 525 aaPredicted RBP1.95□□□□□ -2.1
VPS35-207ENST00000568191 WDR49Q8IV35 697 aa1.95□□□□□ -2.1
VPS35-207ENST00000568191 FBXO16Q8IX29 292 aaPredicted RBP1.95□□□□□ -2.1
VPS35-207ENST00000568191 FBXO25Q8TCJ0 367 aa1.95□□□□□ -2.1
VPS35-207ENST00000568191 NTNG2Q96CW9 530 aa1.95□□□□□ -2.1
VPS35-207ENST00000568191 RAB3CQ96E17 227 aa1.95□□□□□ -2.1
VPS35-207ENST00000568191 CASD1Q96PB1 797 aa1.95□□□□□ -2.1
VPS35-207ENST00000568191 ACPTQ9BZG2 426 aa1.95□□□□□ -2.1
VPS35-207ENST00000568191 LSG1Q9H089 658 aaKnown RBP1.95□□□□□ -2.1
VPS35-207ENST00000568191 KCNMB3Q9NPA1 279 aa1.95□□□□□ -2.1
VPS35-207ENST00000568191 RCOR3Q9P2K3 495 aaPredicted RBP1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms