RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 NDUFV2P19404 249 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 CMPK1P30085 196 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 GGT2P36268 569 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 NCBP2P52298 156 aaKnown RBP eCLIP19.19■□□□□ 0.66
CLN3-230ENST00000568076 EMP3P54852 163 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 KCNC4Q03721 635 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 DUSP2Q05923 314 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 ZNF750Q32MQ0 723 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 KIAA1324Q6UXG2 1013 aaKnown RBP19.19■□□□□ 0.66
CLN3-230ENST00000568076 MFSD9Q8NBP5 474 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 ZNF540Q8NDQ6 660 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 OR5D16Q8NGK9 328 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 LCN9Q8WX39 176 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 FAIM2Q9BWQ8 316 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 GPN2Q9H9Y4 310 aaPredicted RBP19.19■□□□□ 0.66
CLN3-230ENST00000568076 WARS2Q9UGM6 360 aaKnown RBP19.19■□□□□ 0.66
CLN3-230ENST00000568076 KLF15Q9UIH9 416 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 KCND3Q9UK17 655 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 POFUT2Q9Y2G5 429 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 FAM32AQ9Y421 112 aaKnown RBP19.19■□□□□ 0.66
CLN3-230ENST00000568076 A8MVJ9 347 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 NDUFS2O75306 463 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 GADD45GO95257 159 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 OR12D1P0DN82 309 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 ACVR2AP27037 513 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 CERS1P27544 350 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 HPCAP84074 193 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 SYPL1Q16563 259 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 DNASE1L2Q92874 299 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 MSLNLQ96KJ4 702 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 OR51I1Q9H343 314 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 OR6C2Q9NZP2 312 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 A0A1W2PS29 197 aa19.18■□□□□ 0.66
CLN3-230ENST00000568076 BTN3A3O00478 584 aa19.18■□□□□ 0.66
CLN3-230ENST00000568076 NARSO43776 548 aaKnown RBP19.18■□□□□ 0.66
CLN3-230ENST00000568076 FAM20BO75063 409 aa19.18■□□□□ 0.66
CLN3-230ENST00000568076 ACADMP11310 421 aa19.18■□□□□ 0.66
CLN3-230ENST00000568076 GPC1P35052 558 aa19.18■□□□□ 0.66
CLN3-230ENST00000568076 RAB8AP61006 207 aa19.18■□□□□ 0.66
CLN3-230ENST00000568076 FOXD4Q12950 439 aaPredicted RBP19.18■□□□□ 0.66
CLN3-230ENST00000568076 GPR19Q15760 415 aa19.18■□□□□ 0.66
CLN3-230ENST00000568076 C18orf63Q68DL7 685 aa19.18■□□□□ 0.66
CLN3-230ENST00000568076 SZRD1Q7Z422 152 aa19.18■□□□□ 0.66
CLN3-230ENST00000568076 DENND6BQ8NEG7 585 aa19.18■□□□□ 0.66
CLN3-230ENST00000568076 SUN3Q8TAQ9 357 aa19.18■□□□□ 0.66
CLN3-230ENST00000568076 CNRIP1Q96F85 164 aaPredicted RBP19.18■□□□□ 0.66
CLN3-230ENST00000568076 WDR92Q96MX6 357 aa19.18■□□□□ 0.66
CLN3-230ENST00000568076 FCRL4Q96PJ5 515 aa19.18■□□□□ 0.66
CLN3-230ENST00000568076 PSD2Q9BQI7 771 aa19.18■□□□□ 0.66
CLN3-230ENST00000568076 WFDC6Q9BQY6 131 aa19.18■□□□□ 0.66
CLN3-230ENST00000568076 TMEM168Q9H0V1 697 aa19.18■□□□□ 0.66
CLN3-230ENST00000568076 ZCCHC3Q9NUD5 404 aaKnown RBP19.18■□□□□ 0.66
CLN3-230ENST00000568076 FBXW2Q9UKT8 454 aa19.18■□□□□ 0.66
CLN3-230ENST00000568076 TRBV23OR9-2A0A075B6M9 112 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 ERAL1O75616 437 aaKnown RBP19.17■□□□□ 0.66
CLN3-230ENST00000568076 AIFM1O95831 613 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 ALPPL2P10696 532 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 POU2F1P14859 743 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 DRD1P21728 446 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 NR4A1P22736 598 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 SNRPNP63162 240 aaKnown RBP19.17■□□□□ 0.66
CLN3-230ENST00000568076 AQP6Q13520 282 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 PAQR7Q86WK9 346 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 FAM81AQ8TBF8 368 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 SLC35G5Q96KT7 338 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 SIGLEC11Q96RL6 698 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 PSME2Q9UL46 239 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 HCN4Q9Y3Q4 1203 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 RGS10O43665 173 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 KDM1AO60341 852 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 CCNB2O95067 398 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 CBLP22681 906 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 ACTR1BP42025 376 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 TPMTP51580 245 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 ACTR1AP61163 376 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 MRPS21P82921 87 aaKnown RBP19.17■□□□□ 0.66
CLN3-230ENST00000568076 DCTN2Q13561 401 aaKnown RBP19.17■□□□□ 0.66
CLN3-230ENST00000568076 OLIG3Q7RTU3 272 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 TRIM69Q86WT6 500 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 CCDC103Q8IW40 242 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 OR4D11Q8NGI4 311 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 RPLP0P6Q8NHW5 317 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 TBC1D15Q8TC07 691 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 PHF10Q8WUB8 498 aaKnown RBP19.17■□□□□ 0.66
CLN3-230ENST00000568076 THAP11Q96EK4 314 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 OTUB1Q96FW1 271 aaPredicted RBP19.17■□□□□ 0.66
CLN3-230ENST00000568076 ALPK1Q96QP1 1244 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 BBS4Q96RK4 519 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 TREX2Q9BQ50 279 aaPredicted RBP19.17■□□□□ 0.66
CLN3-230ENST00000568076 ENPP5Q9UJA9 477 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 CES1P1Q9UKY3 287 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 PCOLCE2Q9UKZ9 415 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 SNX7Q9UNH6 387 aa19.17■□□□□ 0.66
CLN3-230ENST00000568076 MYO10Q9HD67 2058 aa19.16■□□□□ 0.66
CLN3-230ENST00000568076 FAM227AF5H4B4 570 aa19.16■□□□□ 0.66
CLN3-230ENST00000568076 SLC28A2O43868 658 aa19.16■□□□□ 0.66
CLN3-230ENST00000568076 APBB3O95704 486 aa19.16■□□□□ 0.66
CLN3-230ENST00000568076 HNRNPA2B1P22626 353 aaKnown RBP19.16■□□□□ 0.66
CLN3-230ENST00000568076 NTSP30990 170 aa19.16■□□□□ 0.66
CLN3-230ENST00000568076 KCNJ5P48544 419 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms