RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 CPN2P22792 545 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 PIGAP37287 484 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 KCNJ2P63252 427 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 PLIN5Q00G26 463 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 TNFRSF17Q02223 184 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 SPRED3Q2MJR0 410 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 AP5B1Q2VPB7 878 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 KHDRBS2Q5VWX1 349 aaKnown RBP12.06□□□□□ -0.48
TPM1-220ENST00000559556 MED27Q6P2C8 311 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 ARSKQ6UWY0 536 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 CAPN12Q6ZSI9 719 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 CHSY3Q70JA7 882 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 LRRC25Q8N386 305 aaPredicted RBP12.06□□□□□ -0.48
TPM1-220ENST00000559556 OR7G3Q8NG95 312 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 UBTD2Q8WUN7 234 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 CMTM7Q96FZ5 175 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 KRT12Q99456 494 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 PROK2Q9HC23 129 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 ZFP64Q9NPA5 681 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.06□□□□□ -0.48
TPM1-220ENST00000559556 ZNF358Q9NW07 568 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 MS4A12Q9NXJ0 267 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 DNAJB12Q9NXW2 375 aaKnown RBP12.06□□□□□ -0.48
TPM1-220ENST00000559556 CNIH4Q9P003 139 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 TXNDC16Q9P2K2 825 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 RNF112Q9ULX5 631 aa12.06□□□□□ -0.48
TPM1-220ENST00000559556 CHCHD2Q9Y6H1 151 aaPredicted RBP12.06□□□□□ -0.48
TPM1-220ENST00000559556 FN1P02751 2386 aaKnown RBP12.05□□□□□ -0.48
TPM1-220ENST00000559556 HRKO00198 91 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 PLPP1O14494 284 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 DYRK3O43781 588 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 TGFB1P01137 390 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 C1QAP02745 245 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 FBXO45P0C2W1 286 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 RFPL3SP0C7P2 107 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 SSTR1P30872 391 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 GP5P40197 560 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 PEX19P40855 299 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 RAB10P61026 200 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 DEPDC1Q5TB30 811 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 PRAMEF20Q5VT98 475 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 OR4C11Q6IEV9 310 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 GRHL2Q6ISB3 625 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 DGAT2L6Q6ZPD8 337 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 WDR53Q7Z5U6 358 aaPredicted RBP12.05□□□□□ -0.48
TPM1-220ENST00000559556 TGIF2LYQ8IUE0 185 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 OR4N5Q8IXE1 308 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 ZZZ3Q8IYH5 903 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 ULK2Q8IYT8 1036 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 ST13P4Q8IZP2 240 aaPredicted RBP12.05□□□□□ -0.48
TPM1-220ENST00000559556 RELL2Q8NC24 303 aaPredicted RBP12.05□□□□□ -0.48
TPM1-220ENST00000559556 NEIL3Q8TAT5 605 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 PYROXD1Q8WU10 500 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 CDKL2Q92772 493 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 TANKQ92844 425 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 EXT2Q93063 718 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 ATOH8Q96SQ7 321 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 EXO5Q9H790 373 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 RPF2Q9H7B2 306 aaKnown RBP12.05□□□□□ -0.48
TPM1-220ENST00000559556 ACKR4Q9NPB9 350 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 NUDT4Q9NZJ9 180 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 PHF11Q9UIL8 331 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 ST6GALNAC2Q9UJ37 374 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 TSC22D4Q9Y3Q8 395 aa12.05□□□□□ -0.48
TPM1-220ENST00000559556 CSPG4Q6UVK1 2322 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 TCRBV9S1A1TA0A576 114 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 FAM159BA6NKW6 160 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 K7EPI3 171 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 EIF3HO15372 352 aaKnown RBP eCLIP12.04□□□□□ -0.48
TPM1-220ENST00000559556 DIAPH2O60879 1101 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 SH3BGRLO75368 114 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 SLC35E2BP0CK96 405 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 PCNAP12004 261 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 CD99P14209 185 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 ALOX15P16050 662 aaPredicted RBP12.04□□□□□ -0.48
TPM1-220ENST00000559556 PIK3CBP42338 1070 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 ARFIP1P53367 373 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 HNRNPH2P55795 449 aaKnown RBP12.04□□□□□ -0.48
TPM1-220ENST00000559556 HERVK_113P63132 956 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 ERVK-8P63133 956 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 SLAMF1Q13291 335 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 NTRK2Q16620 822 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 FBXL19-AS1Q494R0 122 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 SEM1Q6ZVN7 128 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 CYS1Q717R9 158 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 SLC29A4Q7RTT9 530 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 ISCA2Q86U28 154 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 GPR180Q86V85 440 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 ZCCHC7Q8N3Z6 543 aaKnown RBP12.04□□□□□ -0.48
TPM1-220ENST00000559556 FAM13CQ8NE31 585 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 CHDHQ8NE62 594 aaPredicted RBP12.04□□□□□ -0.48
TPM1-220ENST00000559556 OR10G3Q8NGC4 313 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 RGMAQ96B86 450 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 PPWD1Q96BP3 646 aaKnown RBP12.04□□□□□ -0.48
TPM1-220ENST00000559556 RBM18Q96H35 190 aaKnown RBP12.04□□□□□ -0.48
TPM1-220ENST00000559556 SH3GL2Q99962 352 aa12.04□□□□□ -0.48
TPM1-220ENST00000559556 GPATCH1Q9BRR8 931 aaKnown RBP12.04□□□□□ -0.48
TPM1-220ENST00000559556 PELOQ9BRX2 385 aaKnown RBP12.04□□□□□ -0.48
TPM1-220ENST00000559556 SORBS1Q9BX66 1292 aaKnown RBP12.04□□□□□ -0.48
TPM1-220ENST00000559556 ERVK-6Q9BXR3 956 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms