RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 EGLN3Q9H6Z9 239 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 GPATCH2Q9NW75 528 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 TNS1Q9HBL0 1735 aaKnown RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 ZNF670-ZNF695F2Z2N8 137 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 EEF1E1O43324 174 aaKnown RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 TSPAN6O43657 245 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 HYAL3O43820 417 aaPredicted RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 IFNA14P01570 189 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 DRD5P21918 477 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 CPN2P22792 545 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 DSTNP60981 165 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.79□□□□□ -0.68
LDLR-208ENST00000558518 FCN2Q15485 313 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 SLC35F1Q5T1Q4 408 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 Q6ZVU0 165 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 SERINC5Q86VE9 423 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 PLPP6Q8IY26 295 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 LRRC17Q8N6Y2 441 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 OR4F15Q8NGB8 312 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 OR52E4Q8NGH9 312 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 BBS10Q8TAM1 723 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 RNFT2Q96EX2 444 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 C11orf24Q96F05 449 aaPredicted RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 MAGEB10Q96LZ2 347 aaPredicted RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 SIGLEC11Q96RL6 698 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 C2orf49Q9BVC5 232 aaPredicted RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 FNDC11Q9BVV2 318 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 SPRTNQ9H040 489 aaPredicted RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 SAP130Q9H0E3 1048 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 MVB12BQ9H7P6 319 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 CNIH4Q9P003 139 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 EIF3KQ9UBQ5 218 aaKnown RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 EXTL2Q9UBQ6 330 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 ZFR2Q9UPR6 939 aaKnown RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 RPL36Q9Y3U8 105 aaKnown RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 ENPP4Q9Y6X5 453 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 DNAH14Q0VDD8 3507 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 MYO9BQ13459 2157 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 ZNF840PA6NDX5 716 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 ARHGEF33A8MVX0 844 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 SGTAO43765 313 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 ERAL1O75616 437 aaKnown RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 IGSF6O95976 241 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 ETV3P41162 512 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 RPS7P62081 194 aaKnown RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 EIF4HQ15056 248 aaKnown RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 PLEKHM3Q6ZWE6 761 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 TRAPPC5Q8IUR0 188 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 FAM20CQ8IXL6 584 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 CMTM8Q8IZV2 173 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 FBXO22Q8NEZ5 403 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 HMGB4Q8WW32 186 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 RASSF5Q8WWW0 418 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 UPRTQ96BW1 309 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 FCRL4Q96PJ5 515 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 MAPKAP1Q9BPZ7 522 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 ACOXLQ9NUZ1 547 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 B4GALT6Q9UBX8 382 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 PPIEQ9UNP9 301 aaKnown RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 PADI2Q9Y2J8 665 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 KCNE2Q9Y6J6 123 aa10.79□□□□□ -0.68
LDLR-208ENST00000558518 ASCC3Q8N3C0 2202 aaKnown RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 DICER1Q9UPY3 1922 aaKnown RBP10.79□□□□□ -0.68
LDLR-208ENST00000558518 FAM183AA6NL82 134 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 GTPBP1O00178 669 aaKnown RBP10.78□□□□□ -0.68
LDLR-208ENST00000558518 SCAMP1O15126 338 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 POLR1CO15160 346 aaPredicted RBP10.78□□□□□ -0.68
LDLR-208ENST00000558518 ORC5O43913 435 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 NR2F1P10589 423 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 ELNP15502 786 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 PCGF2P35227 344 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 SLC11A1P49279 550 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 TMEM145Q8NBT3 493 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 NEIL3Q8TAT5 605 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 HCAR2Q8TDS4 363 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 SORCS1Q8WY21 1168 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 TM9SF4Q92544 642 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 MED30Q96HR3 178 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 UROC1Q96N76 676 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 PLCXD1Q9NUJ7 323 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 NUDT15Q9NV35 164 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 TMEM45AQ9NWC5 275 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 CHD5Q8TDI0 1954 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 SSNA1O43805 119 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 H1F0P07305 194 aaKnown RBP10.78□□□□□ -0.68
LDLR-208ENST00000558518 ATP1B2P14415 290 aaPredicted RBP10.78□□□□□ -0.68
LDLR-208ENST00000558518 ARSBP15848 533 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 CD70P32970 193 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 NNMTP40261 264 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 RING1Q06587 406 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 GPR162Q16538 588 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 TOR2AQ5JU69 321 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 XKRXQ6PP77 449 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 TECPR1Q7Z6L1 1165 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 MRPL10Q7Z7H8 261 aaKnown RBP10.78□□□□□ -0.68
LDLR-208ENST00000558518 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.78□□□□□ -0.68
LDLR-208ENST00000558518 CFAP206Q8IYR0 622 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 CREB3L4Q8TEY5 395 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 ASB11Q8WXH4 323 aa10.78□□□□□ -0.68
LDLR-208ENST00000558518 RIT1Q92963 219 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms