RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 CHTF18Q8WVB6 975 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 FAR1Q8WVX9 515 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 PPWD1Q96BP3 646 aaKnown RBP12.76□□□□□ -0.37
SHMT2-219ENST00000555563 SCMH1Q96GD3 660 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 C5orf34Q96MH7 638 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 SMC6Q96SB8 1091 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 PELOQ9BRX2 385 aaKnown RBP12.76□□□□□ -0.37
SHMT2-219ENST00000555563 MECRQ9BV79 373 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 GATA5Q9BWX5 397 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-219ENST00000555563 SHCBP1LQ9BZQ2 653 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 KLHL1Q9NR64 748 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 LRFN1Q9P244 771 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 HECTD1Q9ULT8 2610 aa12.76□□□□□ -0.37
SHMT2-219ENST00000555563 CLEC18AA5D8T8 446 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 TMEM200CA6NKL6 621 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 H3BQF6 201 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 HRKO00198 91 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 CRCPO75575 148 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 SLC25A12O75746 678 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 RASAL1O95294 804 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 CBX6O95503 412 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 IGKV3-11P04433 115 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 TUBBP07437 444 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 CD46P15529 392 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 ALDH3A1P30838 453 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 TRHRP34981 398 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-219ENST00000555563 CYB561P49447 251 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 SPIN4Q56A73 249 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 CLEC18BQ6UXF7 455 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 ZNF227Q86WZ6 799 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 NAV2Q8IVL1 2488 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 CLEC18CQ8NCF0 446 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 TCP10LQ8TDR4 215 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 APIPQ96GX9 242 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 RBM18Q96H35 190 aaKnown RBP12.75□□□□□ -0.37
SHMT2-219ENST00000555563 SENP5Q96HI0 755 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-219ENST00000555563 FBXL20Q96IG2 436 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 SLX1AQ9BQ83 275 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 CNPPD1Q9BV87 410 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 TRIM45Q9H8W5 580 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-219ENST00000555563 LIN28AQ9H9Z2 209 aaKnown RBP12.75□□□□□ -0.37
SHMT2-219ENST00000555563 OLAHQ9NV23 265 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 MYOTQ9UBF9 498 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 COPS7AQ9UBW8 275 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 PCDHGB6Q9Y5F9 930 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 PCDHA9Q9Y5H5 950 aa12.75□□□□□ -0.37
SHMT2-219ENST00000555563 SERTM1A2A2V5 107 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 ANKUB1A6NFN9 424 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 WWP2O00308 870 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 CDK2AP1O14519 115 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 RGS16O15492 202 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-219ENST00000555563 DYRK3O43781 588 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 TYROBPO43914 113 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 PCDH7O60245 1069 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 TRIM13O60858 407 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 GUCY1B2O75343 617 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 OR2J2O76002 312 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 PIK3R1P27986 724 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 SERPINB3P29508 390 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 TIA1P31483 386 aaKnown RBP eCLIP12.74□□□□□ -0.37
SHMT2-219ENST00000555563 HLCSP50747 726 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 SSR4P51571 173 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 HK2P52789 917 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 ERVK-8P63133 956 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 RNF4P78317 190 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 RAE1P78406 368 aaKnown RBP12.74□□□□□ -0.37
SHMT2-219ENST00000555563 SRSF11Q05519 484 aaKnown RBP12.74□□□□□ -0.37
SHMT2-219ENST00000555563 ACSM2AQ08AH3 577 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 BIKQ13323 160 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 SPRED3Q2MJR0 410 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 ACSM2BQ68CK6 577 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 ZNF324BQ6AW86 544 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-219ENST00000555563 CLEC6AQ6EIG7 209 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 SLC48A1Q6P1K1 146 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 C9orf40Q8IXQ3 194 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 HORMAD2Q8N7B1 307 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 OR4K14Q8NGD5 310 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 OR8K3Q8NH51 312 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 NR4A3Q92570 626 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 RIT1Q92963 219 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 ZBTB9Q96C00 473 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 TM4SF18Q96CE8 201 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 ART5Q96L15 291 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 RASL10BQ96S79 203 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 EBPLQ9BY08 206 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 SENP1Q9P0U3 644 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 MCM8Q9UJA3 840 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 ERVK-19Q9WJR5 959 aa12.74□□□□□ -0.37
SHMT2-219ENST00000555563 UBR5O95071 2799 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-219ENST00000555563 C1orf226A1L170 272 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 NME2P1O60361 137 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 SP1P08047 785 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 SLC35E2P0CK97 266 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 UROSP10746 265 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 CPMP14384 443 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 NME2P22392 152 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 TDGF1P3P51864 188 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 TRA2BP62995 288 aaKnown RBP12.73□□□□□ -0.37
SHMT2-219ENST00000555563 BTKQ06187 659 aa12.73□□□□□ -0.37
SHMT2-219ENST00000555563 ASPHQ12797 758 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms