RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 FOXA1P55317 472 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 RAB8AP61006 207 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 PPP2R2AP63151 447 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 BTN3A2P78410 334 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 HSF1Q00613 529 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 CHI3L2Q15782 390 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 MFSD4BQ5TF39 518 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 FCRLBQ6BAA4 426 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 RIPOR1Q6ZS17 1223 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 UBE3DQ7Z6J8 389 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 TRIM42Q8IWZ5 723 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 KIRREL3Q8IZU9 778 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 RNF175Q8N4F7 328 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 PPP1R14CQ8TAE6 165 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 RGMAQ96B86 450 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 FAR2Q96K12 515 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 OR1F2PQ96R84 312 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 SERINC2Q96SA4 455 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 HES7Q9BYE0 225 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 OR51B5Q9H339 312 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 TNFRSF12AQ9NP84 129 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 FARSBQ9NSD9 589 aaKnown RBP8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 NMRK1Q9NWW6 199 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 ANKRD10Q9NXR5 420 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 COQ3Q9NZJ6 369 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 ADAM29Q9UKF5 820 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 TIMM22Q9Y584 194 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 HIVEP1P15822 2718 aa8.14□□□□□ -1.11
CLSTN3-212ENST00000541770 HCFC1P51610 2035 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 IGHV3-20A0A0C4DH32 117 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 NPIPB8E9PQR5 432 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 PLPP1O14494 284 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 KLF11O14901 512 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 AZIN1O14977 448 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 B3GALT2O43825 422 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 CRCPO75575 148 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 SEC24DO94855 1032 aaPredicted RBP8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 ETHE1O95571 254 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 B3GALT4O96024 378 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 NEFHP12036 1026 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 ICAM2P13598 275 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 DRD2P14416 443 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 BGNP21810 368 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 HIST1H1TP22492 207 aaPredicted RBP8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 ATP5A1P25705 553 aaKnown RBP8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 ARRB2P32121 409 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 HTR6P50406 440 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 RAP1GDS1P52306 607 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 ABCE1P61221 599 aaKnown RBP8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 AP2B1P63010 937 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 GTF3C1Q12789 2109 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 STX3Q13277 289 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 ABRAXAS2Q15018 415 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 PCOLCEQ15113 449 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 SYT16Q17RD7 645 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 AP5B1Q2VPB7 878 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 BTBD16Q32M84 506 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 KRTCAP3Q53RY4 240 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 TCHHL1Q5QJ38 904 aaPredicted RBP8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 CES4AQ5XG92 561 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 KANK2Q63ZY3 851 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 OR4C11Q6IEV9 310 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 ZNF793Q6ZN11 406 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 TRIM46Q7Z4K8 759 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 CLYBLQ8N0X4 340 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 BEST3Q8N1M1 668 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 CA13Q8N1Q1 262 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 METTL4Q8N3J2 472 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 ZCCHC7Q8N3Z6 543 aaKnown RBP8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 ACOT4Q8N9L9 421 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 FAM98AQ8NCA5 519 aaKnown RBP8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 OR51Q1Q8NH59 317 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 MGARPQ8TDB4 240 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 METTL21AQ8WXB1 218 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 METTL2AQ96IZ6 378 aaKnown RBP8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 SIGLEC12Q96PQ1 595 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 KCNA7Q96RP8 456 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 PAIP2Q9BPZ3 127 aaKnown RBP8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 ZNF717Q9BY31 904 aaPredicted RBP8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 SHCBP1LQ9BZQ2 653 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 RNF32Q9H0A6 362 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 ENKD1Q9H0I2 346 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 DDX31Q9H8H2 851 aaKnown RBP8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 COPS7BQ9H9Q2 264 aaPredicted RBP8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 KCNK13Q9HB14 408 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 LYRM4Q9HD34 91 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 MED4Q9NPJ6 270 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 AHSPQ9NZD4 102 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 VPS29Q9UBQ0 182 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 HAO1Q9UJM8 370 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 MKL2Q9ULH7 1088 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 SLC12A4Q9UP95 1085 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 ZNF835Q9Y2P0 537 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 RAP2CQ9Y3L5 183 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 TRAF6Q9Y4K3 522 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 SCN2AQ99250 2005 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 PCNX1Q96RV3 2341 aa8.13□□□□□ -1.11
CLSTN3-212ENST00000541770 A0A0A6YYD5 115 aa8.12□□□□□ -1.11
CLSTN3-212ENST00000541770 A0A0G2JN53 185 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms