RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 OPN3Q9H1Y3 402 aaPredicted RBP12.58□□□□□ -0.4
NKX3-1-202ENST00000523261 MAPRE3Q9UPY8 281 aa12.58□□□□□ -0.4
NKX3-1-202ENST00000523261 DTX4Q9Y2E6 619 aa12.58□□□□□ -0.4
NKX3-1-202ENST00000523261 DHRS7Q9Y394 339 aa12.58□□□□□ -0.4
NKX3-1-202ENST00000523261 PRR14LQ5THK1 2151 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 MALRD1Q5VYJ5 2156 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 E7EVH7 732 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 NDUFS7O75251 213 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 TGM6O95932 706 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 CRHP06850 196 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 SOD3P08294 240 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 PAMP19021 973 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 OGNP20774 298 aaKnown RBP12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 SAT1P21673 171 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 CHMP24386 653 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 SLC6A12P48065 614 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 MASP1P48740 699 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 SESN2P58004 480 aaPredicted RBP12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 SRYQ05066 204 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 STX4Q12846 297 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 SCIMPQ6UWF3 145 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 CES3Q6UWW8 571 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 YRDCQ86U90 279 aaKnown RBP12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 FAM83FQ8NEG4 500 aaPredicted RBP12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 CD200R1Q8TD46 325 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 ATL1Q8WXF7 558 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 AKAP1Q92667 903 aaKnown RBP eCLIP12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 KCNJ9Q92806 393 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 NEIL2Q969S2 332 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 SENP5Q96HI0 755 aaPredicted RBP12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 TNFRSF13CQ96RJ3 184 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 GPR21Q99679 349 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 SLC39A3Q9BRY0 314 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 L2HGDHQ9H9P8 463 aa12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 EIF2B3Q9NR50 452 aaKnown RBP12.57□□□□□ -0.4
NKX3-1-202ENST00000523261 IGHV4-30-2A0A087WSY4 118 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 B3GALT2O43825 422 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 LDB3O75112 727 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 SNX4O95219 450 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 DANCRP0C864 163 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 LIM2P55344 173 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 SERTAD2Q14140 314 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 CSHL1Q14406 222 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 EFTUD2Q15029 972 aaKnown RBP eCLIP12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 ZNF549Q6P9A3 640 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 PACS2Q86VP3 889 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 CILP2Q8IUL8 1156 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 GRAMD2AQ8IUY3 354 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 CNEP1R1Q8N9A8 125 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 OR56A3Q8NH54 315 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 SLC5A11Q8WWX8 675 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 GTPBP3Q969Y2 492 aaKnown RBP12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 CTHRC1Q96CG8 243 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 PLPPR2Q96GM1 343 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 CCDC42Q96M95 316 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 NHEJ1Q9H9Q4 299 aaPredicted RBP12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 PARVBQ9HBI1 364 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 DAPP1Q9UN19 280 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 LIPT1Q9Y234 373 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 NOTCH1P46531 2555 aa12.56□□□□□ -0.4
NKX3-1-202ENST00000523261 ALPK2Q86TB3 2170 aa12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 HRKO00198 91 aa12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 ERI3O43414 337 aaKnown RBP12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 APRTP07741 180 aa12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 F7P08709 466 aaPredicted RBP12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 PTPN6P29350 595 aa12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 HNRNPH1P31943 449 aaKnown RBP12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 MSH2P43246 934 aa12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 KCNJ5P48544 419 aa12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 UBASH3AP57075 661 aa12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 STXBP1P61764 594 aaKnown RBP12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 ID2Q02363 134 aa12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 DHX9Q08211 1270 aaKnown RBP12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 RBBP5Q15291 538 aaKnown RBP12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 DUPD1Q68J44 220 aa12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 IL17RELQ6ZVW7 336 aa12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 KLHDC8AQ8IYD2 350 aa12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 GPATCH11Q8N954 259 aa12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 ALG3Q92685 438 aa12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 MS4A6EQ96DS6 147 aa12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 TSNARE1Q96NA8 513 aa12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 RHNO1Q9BSD3 238 aa12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 IL22Q9GZX6 179 aa12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 RAB6BQ9NRW1 208 aa12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 RYDENQ9NUL5 291 aaKnown RBP12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 INTS10Q9NVR2 710 aaKnown RBP12.55□□□□□ -0.4
NKX3-1-202ENST00000523261 A0A0G2JK05 382 aa12.54□□□□□ -0.4
NKX3-1-202ENST00000523261 PLOD2O00469 737 aa12.54□□□□□ -0.4
NKX3-1-202ENST00000523261 UBFD1O14562 309 aaKnown RBP12.54□□□□□ -0.4
NKX3-1-202ENST00000523261 TP53I11O14683 189 aa12.54□□□□□ -0.4
NKX3-1-202ENST00000523261 HCRTR2O43614 444 aa12.54□□□□□ -0.4
NKX3-1-202ENST00000523261 LMX1BO60663 402 aa12.54□□□□□ -0.4
NKX3-1-202ENST00000523261 CGAP01215 116 aa12.54□□□□□ -0.4
NKX3-1-202ENST00000523261 C8GP07360 202 aa12.54□□□□□ -0.4
NKX3-1-202ENST00000523261 ZNF16P17020 682 aaPredicted RBP12.54□□□□□ -0.4
NKX3-1-202ENST00000523261 TBXA2RP21731 343 aa12.54□□□□□ -0.4
NKX3-1-202ENST00000523261 IGFBP5P24593 272 aa12.54□□□□□ -0.4
NKX3-1-202ENST00000523261 CERS1P27544 350 aa12.54□□□□□ -0.4
NKX3-1-202ENST00000523261 CETN2P41208 172 aa12.54□□□□□ -0.4
NKX3-1-202ENST00000523261 KIR2DL2P43627 348 aaPredicted RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms