RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 FAM212BQ9NTI7 297 aaPredicted RBP2.73□□□□□ -1.97
VPS50-219ENST00000495039 DEPPQ9NTK1 212 aa2.73□□□□□ -1.97
VPS50-219ENST00000495039 TEKT2Q9UIF3 430 aa2.73□□□□□ -1.97
VPS50-219ENST00000495039 PSORS1C1Q9UIG5 152 aa2.73□□□□□ -1.97
VPS50-219ENST00000495039 FBXW2Q9UKT8 454 aa2.73□□□□□ -1.97
VPS50-219ENST00000495039 EXOC7Q9UPT5 735 aa2.73□□□□□ -1.97
VPS50-219ENST00000495039 NIP7Q9Y221 180 aaKnown RBP eCLIP2.73□□□□□ -1.97
VPS50-219ENST00000495039 KCNK6Q9Y257 313 aa2.73□□□□□ -1.97
VPS50-219ENST00000495039 NAALAD2Q9Y3Q0 740 aa2.73□□□□□ -1.97
VPS50-219ENST00000495039 OR1A2Q9Y585 309 aa2.73□□□□□ -1.97
VPS50-219ENST00000495039 TRBV5-4A0A0C4DH59 114 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 NEDD8-MDP1E9PL57 170 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 OR6A2O95222 327 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 CPNE6O95741 557 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 LMO2P25791 158 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 OR1D2P34982 312 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 KCNK10P57789 538 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 ACY1Q03154 408 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 GIT2Q14161 759 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 FASTKQ14296 549 aaKnown RBP2.72□□□□□ -1.97
VPS50-219ENST00000495039 SIX1Q15475 284 aaPredicted RBP2.72□□□□□ -1.97
VPS50-219ENST00000495039 SGCBQ16585 318 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 IFI44LQ53G44 452 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 TEX35Q5T0J7 233 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 C1QTNF12Q5T7M4 302 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 PRAMEF8Q5VWM4 474 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 CAPN13Q6MZZ7 669 aaPredicted RBP2.72□□□□□ -1.97
VPS50-219ENST00000495039 NEPROQ6NW34 567 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 CD164L2Q6UWJ8 174 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 ZNF730Q6ZMV8 503 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 C17orf64Q86WR6 236 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 PRR22Q8IZ63 422 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 NAT8LQ8N9F0 302 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 CLEC1AQ8NC01 280 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 CSNK1G2-AS1Q8NCQ2 148 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 LPCAT1Q8NF37 534 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 OR1B1Q8NGR6 318 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 HAS2Q92819 552 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 BADQ92934 168 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 EPSTI1Q96J88 318 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 RCHY1Q96PM5 261 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 SSX3Q99909 188 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 CCDC28BQ9BUN5 200 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 RBM24Q9BX46 236 aaKnown RBP2.72□□□□□ -1.97
VPS50-219ENST00000495039 OSBPL8Q9BZF1 889 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 ALDH8A1Q9H2A2 487 aaPredicted RBP2.72□□□□□ -1.97
VPS50-219ENST00000495039 MGAT4AQ9UM21 535 aa2.72□□□□□ -1.97
VPS50-219ENST00000495039 FGD5Q6ZNL6 1462 aa2.71□□□□□ -1.97
VPS50-219ENST00000495039 LOC390937A0A1W2PQ73 354 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 A0A1W2PRV1 198 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 FAM168BA1KXE4 195 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 BCLAF3A2AJT9 711 aaKnown RBP2.71□□□□□ -1.98
VPS50-219ENST00000495039 K7EQG2 157 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 PSMD3O43242 534 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 KIAA0513O60268 411 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 CSO75390 466 aaKnown RBP2.71□□□□□ -1.98
VPS50-219ENST00000495039 AKAP3O75969 853 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 CHRNGP07510 517 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 NUDT17P0C025 328 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 B4GALT1P15291 398 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 STIP1P31948 543 aaKnown RBP2.71□□□□□ -1.98
VPS50-219ENST00000495039 ID1P41134 155 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 SLC1A4P43007 532 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 SLC1A6P48664 564 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 SMSP52788 366 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 KIAA1024LP59773 190 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 PPIAP62937 165 aaKnown RBP2.71□□□□□ -1.98
VPS50-219ENST00000495039 MFGE8Q08431 387 aaPredicted RBP2.71□□□□□ -1.98
VPS50-219ENST00000495039 Q1RN00 199 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 AARDQ4LEZ3 155 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 SLC39A12Q504Y0 691 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 CCDC184Q52MB2 194 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 C9orf66Q5T8R8 295 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 AGAP7PQ5VUJ5 663 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 TMUB2Q71RG4 321 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 PRSS42Q7Z5A4 293 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 PSMA8Q8TAA3 256 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 UBTD2Q8WUN7 234 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 PCED1BQ96HM7 432 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 S1PR3Q99500 378 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 DDX50Q9BQ39 737 aaKnown RBP2.71□□□□□ -1.98
VPS50-219ENST00000495039 ASB8Q9H765 288 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 CWC25Q9NXE8 425 aaPredicted RBP2.71□□□□□ -1.98
VPS50-219ENST00000495039 MAD2L2Q9UI95 211 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 EXOC6BQ9Y2D4 811 aa2.71□□□□□ -1.98
VPS50-219ENST00000495039 SALL1Q9NSC2 1324 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 A0A1W2PQ72 361 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 SLC15A5A6NIM6 579 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 RPL37AP8A6NKH3 93 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 TXNL1O43396 289 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 RTN2O75298 545 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 GMNNO75496 209 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 OR6B1O95007 311 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 IGHG1P01857 330 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 MT-ND1P03886 318 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 FHP07954 510 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 FERP16591 822 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 CYP3A5P20815 502 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 GPX3P22352 226 aa2.7□□□□□ -1.98
VPS50-219ENST00000495039 GLRA1P23415 457 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms