RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 UBTD2Q8WUN7 234 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 SPACA9Q96E40 222 aaPredicted RBP11.42□□□□□ -0.58
CPSF3-204ENST00000489403 CMTM7Q96FZ5 175 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 FBXL20Q96IG2 436 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 ART5Q96L15 291 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 ATOH8Q96SQ7 321 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 EXO5Q9H790 373 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 RPF2Q9H7B2 306 aaKnown RBP11.42□□□□□ -0.58
CPSF3-204ENST00000489403 MS4A12Q9NXJ0 267 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 ALKBH4Q9NXW9 302 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 OPTCQ9UBM4 332 aa11.42□□□□□ -0.58
CPSF3-204ENST00000489403 BOKQ9UMX3 212 aaPredicted RBP11.42□□□□□ -0.58
CPSF3-204ENST00000489403 CHCHD2Q9Y6H1 151 aaPredicted RBP11.42□□□□□ -0.58
CPSF3-204ENST00000489403 SUPT3HB4E1H0 165 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 K7EPI3 171 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 EIF3HO15372 352 aaKnown RBP eCLIP11.41□□□□□ -0.58
CPSF3-204ENST00000489403 DYRK3O43781 588 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 DIAPH2O60879 1101 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 SUPT3HO75486 399 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 FAM155BO75949 473 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 SLC35E2BP0CK96 405 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 ALOX15P16050 662 aaPredicted RBP11.41□□□□□ -0.58
CPSF3-204ENST00000489403 PAFAH1B1P43034 410 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 RAP1GDS1P52306 607 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 HNRNPH2P55795 449 aaKnown RBP11.41□□□□□ -0.58
CPSF3-204ENST00000489403 GPX6P59796 221 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 GNG11P61952 73 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 HERVK_113P63132 956 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 ERVK-8P63133 956 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 KCNJ2P63252 427 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 DDX39BQ13838 428 aaKnown RBP11.41□□□□□ -0.58
CPSF3-204ENST00000489403 SNTB1Q13884 538 aaKnown RBP11.41□□□□□ -0.58
CPSF3-204ENST00000489403 SLC25A35Q3KQZ1 300 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 ARSKQ6UWY0 536 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 SEM1Q6ZVN7 128 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 CYS1Q717R9 158 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 GPR180Q86V85 440 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 LRRC25Q8N386 305 aaPredicted RBP11.41□□□□□ -0.58
CPSF3-204ENST00000489403 FBXW8Q8N3Y1 598 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 SLC15A4Q8N697 577 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 OR10G3Q8NGC4 313 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 HUS1BQ8NHY5 278 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 RBM18Q96H35 190 aaKnown RBP11.41□□□□□ -0.58
CPSF3-204ENST00000489403 GAL3ST4Q96RP7 486 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 NAPGQ99747 312 aaPredicted RBP11.41□□□□□ -0.58
CPSF3-204ENST00000489403 ERVK-6Q9BXR3 956 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 SLC6A15Q9H2J7 730 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 DPH5Q9H2P9 285 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 ZFP64Q9NPA5 681 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 DNAJB12Q9NXW2 375 aaKnown RBP11.41□□□□□ -0.58
CPSF3-204ENST00000489403 CNOT11Q9UKZ1 510 aaKnown RBP11.41□□□□□ -0.58
CPSF3-204ENST00000489403 ERVK-19Q9WJR5 959 aa11.41□□□□□ -0.58
CPSF3-204ENST00000489403 FAM47E-STBD1D6RA91 191 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 KERAO60938 352 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 CTAG2O75638 210 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 LRATO95237 230 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 CLPSP04118 112 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 FBXO45P0C2W1 286 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 MTHFD2P13995 350 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 SPRP35270 261 aaPredicted RBP11.4□□□□□ -0.58
CPSF3-204ENST00000489403 SLC37A1P57057 533 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 TBL3Q12788 808 aaKnown RBP11.4□□□□□ -0.58
CPSF3-204ENST00000489403 CALCOCO2Q13137 446 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 BIKQ13323 160 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 SLMAPQ14BN4 828 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 EBPQ15125 230 aaKnown RBP11.4□□□□□ -0.58
CPSF3-204ENST00000489403 SPRED3Q2MJR0 410 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 KBTBD12Q3ZCT8 623 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 GRTP1Q5TC63 336 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 C3orf62Q6ZUJ4 267 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 RAPH1Q70E73 1250 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 CTAGE3PQ8IX95 158 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 ZZZ3Q8IYH5 903 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 ULK2Q8IYT8 1036 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 DND1Q8IYX4 353 aaKnown RBP11.4□□□□□ -0.58
CPSF3-204ENST00000489403 ST13P4Q8IZP2 240 aaPredicted RBP11.4□□□□□ -0.58
CPSF3-204ENST00000489403 ZCCHC7Q8N3Z6 543 aaKnown RBP11.4□□□□□ -0.58
CPSF3-204ENST00000489403 RELL2Q8NC24 303 aaPredicted RBP11.4□□□□□ -0.58
CPSF3-204ENST00000489403 FAM13CQ8NE31 585 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 NEIL3Q8TAT5 605 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 TANKQ92844 425 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 NINJ1Q92982 152 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 RGMAQ96B86 450 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 MTERF1Q99551 399 aaKnown RBP11.4□□□□□ -0.58
CPSF3-204ENST00000489403 GPATCH1Q9BRR8 931 aaKnown RBP11.4□□□□□ -0.58
CPSF3-204ENST00000489403 TMUB1Q9BVT8 246 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 ZNF717Q9BY31 904 aaPredicted RBP11.4□□□□□ -0.58
CPSF3-204ENST00000489403 WWTR1Q9GZV5 400 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 CXXC4Q9H2H0 198 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 ACKR4Q9NPB9 350 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 DMRT3Q9NQL9 472 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 IGSF5Q9NSI5 407 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 CCM2LQ9NUG4 571 aaPredicted RBP11.4□□□□□ -0.58
CPSF3-204ENST00000489403 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.4□□□□□ -0.58
CPSF3-204ENST00000489403 ZNF358Q9NW07 568 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 QPCTLQ9NXS2 382 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 GRHL1Q9NZI5 618 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 CNIH4Q9P003 139 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 WHRNQ9P202 907 aa11.4□□□□□ -0.58
CPSF3-204ENST00000489403 B4GALT7Q9UBV7 327 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms