RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 LRATO95237 230 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 GPR75O95800 540 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 PRKAR1AP10644 381 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 IDO1P14902 403 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 DDCP20711 480 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 PRPS1L1P21108 318 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 MAOAP21397 527 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 TACR1P25103 407 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 HPCAL1P37235 193 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 HNRNPFP52597 415 aaKnown RBP9.66□□□□□ -0.86
SKA1-204ENST00000488454 SEC24CP53992 1094 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 FOXL2P58012 376 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 OR4D2P58180 307 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 STX1BP61266 288 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 FOLH1Q04609 750 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 SRSF6Q13247 344 aaKnown RBP9.66□□□□□ -0.86
SKA1-204ENST00000488454 GSTA3Q16772 222 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 UGT8Q16880 541 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 LSM12Q3MHD2 195 aaKnown RBP9.66□□□□□ -0.86
SKA1-204ENST00000488454 FAM71E1Q6IPT2 247 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 SLC48A1Q6P1K1 146 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 CPEB2Q7Z5Q1 589 aaKnown RBP9.66□□□□□ -0.86
SKA1-204ENST00000488454 OR4N5Q8IXE1 308 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 SHISA5Q8N114 240 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 TMEM52Q8NDY8 209 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 CLHC1Q8NHS4 586 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 DNAJB14Q8TBM8 379 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 THAP4Q8WY91 577 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 GFM2Q969S9 779 aaKnown RBP9.66□□□□□ -0.86
SKA1-204ENST00000488454 PPCDCQ96CD2 204 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 KLHL29Q96CT2 875 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 RBM18Q96H35 190 aaKnown RBP9.66□□□□□ -0.86
SKA1-204ENST00000488454 EGLN2Q96KS0 407 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 DGAT2Q96PD7 388 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 ZBTB18Q99592 522 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 EBF4Q9BQW3 602 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 ALOXE3Q9BYJ1 711 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 DPY30Q9C005 99 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 FAM107BQ9H098 131 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 REEP4Q9H6H4 257 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 ASIC5Q9NY37 505 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 EHD3Q9NZN3 535 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 SH3BP4Q9P0V3 963 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 KLHL14Q9P2G3 628 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 ADAM21Q9UKJ8 722 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 UTS2RQ9UKP6 389 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 G3BP2Q9UN86 482 aaKnown RBP9.66□□□□□ -0.86
SKA1-204ENST00000488454 ENTPD4Q9Y227 616 aa9.66□□□□□ -0.86
SKA1-204ENST00000488454 NCOR2Q9Y618 2525 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 SCN3AQ9NY46 2000 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 WDFY3Q8IZQ1 3526 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 A0A087WV48 116 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 WASHC1A8K0Z3 465 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 E9PBE3 544 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 TAF4O00268 1085 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 KLHL41O60662 606 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 COX7A2P14406 83 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 CSNK2A2P19784 350 aaPredicted RBP9.65□□□□□ -0.86
SKA1-204ENST00000488454 NCF2P19878 526 aaPredicted RBP9.65□□□□□ -0.86
SKA1-204ENST00000488454 MPIP34949 423 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 XKP51811 444 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 DIO3P55073 304 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 CLDN8P56748 225 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 TMPRSS3P57727 454 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 IRX1P78414 480 aaPredicted RBP9.65□□□□□ -0.86
SKA1-204ENST00000488454 ID2Q02363 134 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 TLE3Q04726 772 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 SF3A3Q12874 501 aaKnown RBP eCLIP9.65□□□□□ -0.86
SKA1-204ENST00000488454 IL10RAQ13651 578 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 CRTC2Q53ET0 693 aaPredicted RBP9.65□□□□□ -0.86
SKA1-204ENST00000488454 C4orf17Q53FE4 359 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 METTL21CQ5VZV1 264 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 TMEM205Q6UW68 189 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 RIPOR1Q6ZS17 1223 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 MTERF4Q7Z6M4 381 aaKnown RBP9.65□□□□□ -0.86
SKA1-204ENST00000488454 ANKRD37Q7Z713 158 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 TICAM1Q8IUC6 712 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 SCUBE1Q8IWY4 988 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.65□□□□□ -0.86
SKA1-204ENST00000488454 STON2Q8WXE9 905 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 TSLPQ969D9 159 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 UCN3Q969E3 161 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 EXOSC8Q96B26 276 aaKnown RBP9.65□□□□□ -0.86
SKA1-204ENST00000488454 ANKRD9Q96BM1 317 aaPredicted RBP9.65□□□□□ -0.86
SKA1-204ENST00000488454 MTERF3Q96E29 417 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 FER1L6-AS2Q96M78 137 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 BBS4Q96RK4 519 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 LPAR4Q99677 370 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 ELAC2Q9BQ52 826 aaKnown RBP9.65□□□□□ -0.86
SKA1-204ENST00000488454 PELOQ9BRX2 385 aaKnown RBP9.65□□□□□ -0.86
SKA1-204ENST00000488454 TMEM120AQ9BXJ8 343 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 NECTIN3Q9NQS3 549 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 PNO1Q9NRX1 252 aaKnown RBP9.65□□□□□ -0.86
SKA1-204ENST00000488454 ATAD3AQ9NVI7 634 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 AIG1Q9NVV5 245 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 HEY2Q9UBP5 337 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 CLCA3PQ9Y6N3 262 aa9.65□□□□□ -0.86
SKA1-204ENST00000488454 AHCTF1Q8WYP5 2266 aa9.65□□□□□ -0.87
SKA1-204ENST00000488454 NSG1A0A0A6YYJ2 146 aa9.64□□□□□ -0.87
SKA1-204ENST00000488454 MYOCOSA0A1B0GUC4 107 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms