RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 FUCA1P04066 466 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 HNRNPA2B1P22626 353 aaKnown RBP10.53□□□□□ -0.72
HDAC6-228ENST00000486227 SLAMF1Q13291 335 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 WSCD2Q2TBF2 565 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 FAM78AQ5JUQ0 283 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 FAM180BQ6P0A1 224 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 MAVSQ7Z434 540 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 OR5P2Q8WZ92 322 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 MR1Q95460 341 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 IFT27Q9BW83 186 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 PAQR5Q9NXK6 330 aaPredicted RBP10.53□□□□□ -0.72
HDAC6-228ENST00000486227 BAIAP2Q9UQB8 552 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 PRAMEF33A0A0G2JMD5 474 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 ACOT8O14734 319 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 HCN1O60741 890 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 PRAMEF10O60809 474 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 UPK1BO75841 260 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 SOX14O95416 240 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 UQCRC2P22695 453 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 ARNTP27540 789 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 PDHA2P29803 388 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 RAB28P51157 221 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 NCS1P62166 190 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 RPS26P62854 115 aaKnown RBP10.53□□□□□ -0.72
HDAC6-228ENST00000486227 NUMA1Q14980 2115 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 DUS1LQ6P1R4 473 aaKnown RBP10.53□□□□□ -0.72
HDAC6-228ENST00000486227 UNC5DQ6UXZ4 953 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 AMIGO1Q86WK6 493 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 OR4C6Q8NH72 309 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 RFKQ969G6 155 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 RBCK1Q9BYM8 510 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 NAA50Q9GZZ1 169 aaKnown RBP10.53□□□□□ -0.72
HDAC6-228ENST00000486227 RACGAP1Q9H0H5 632 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 IL21RQ9HBE5 538 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 IKZF2Q9UKS7 526 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 TAF1LQ8IZX4 1826 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 I3L521 148 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 OR5F1O95221 314 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 PRLP01236 227 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 C1SP09871 688 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 AOAHP28039 575 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 HOXC12P31275 282 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 IRS1P35568 1242 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 SOX9P48436 509 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 MADCAM1Q13477 382 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 PNCKQ6P2M8 343 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 ZFP90Q8TF47 636 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 FATE1Q969F0 183 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 C1QTNF1Q9BXJ1 281 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 RDH14Q9HBH5 336 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 PDE7BQ9NP56 450 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 HSPB11Q9Y547 144 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 A8MV72 311 aaPredicted RBP10.53□□□□□ -0.72
HDAC6-228ENST00000486227 I6L893 689 aaPredicted RBP10.53□□□□□ -0.72
HDAC6-228ENST00000486227 PGRMC2O15173 223 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 S100A9P06702 114 aaKnown RBP10.53□□□□□ -0.72
HDAC6-228ENST00000486227 KCNC1P48547 511 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 PXNP49023 591 aaPredicted RBP10.53□□□□□ -0.72
HDAC6-228ENST00000486227 CLCN7P51798 805 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 VSX2P58304 361 aaPredicted RBP10.53□□□□□ -0.72
HDAC6-228ENST00000486227 E2F2Q14209 437 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 TSTQ16762 297 aaKnown RBP10.53□□□□□ -0.72
HDAC6-228ENST00000486227 CDKL4Q5MAI5 379 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 AGAP7PQ5VUJ5 663 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 CXXC5Q7LFL8 322 aaKnown RBP10.53□□□□□ -0.72
HDAC6-228ENST00000486227 PLA2G15Q8NCC3 412 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 VN1R2Q8NFZ6 395 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 GRHL3Q8TE85 626 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 NXPE3Q969Y0 559 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 ZNF717Q9BY31 904 aaPredicted RBP10.53□□□□□ -0.72
HDAC6-228ENST00000486227 MROQ9BYG7 248 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 KLHL31Q9H511 634 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 TAS2R7Q9NYW3 318 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 WDR45Q9Y484 360 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 IRAK3Q9Y616 596 aa10.53□□□□□ -0.72
HDAC6-228ENST00000486227 FAM92AA1XBS5 289 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 AGR2O95994 175 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 OR12D1P0DN82 309 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 IL7P13232 177 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 MYOGP15173 224 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 HRH2P25021 359 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 ZXDBP98169 803 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 TDGQ13569 410 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 NHSL2Q5HYW2 709 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 GRHL2Q6ISB3 625 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 RASSF6Q6ZTQ3 369 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 HMGN2P46Q86SG4 172 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 IZUMO1Q8IYV9 350 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 LKAAEAR1Q8TD35 194 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 SMPDL3BQ92485 455 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 NEIL2Q969S2 332 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 HHIPQ96QV1 700 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 TP63Q9H3D4 680 aaPredicted RBP10.52□□□□□ -0.72
HDAC6-228ENST00000486227 HEBP1Q9NRV9 189 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 CXXC1Q9P0U4 656 aaPredicted RBP10.52□□□□□ -0.72
HDAC6-228ENST00000486227 ZNF451Q9Y4E5 1061 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 PCDHB14Q9Y5E9 798 aa10.52□□□□□ -0.72
HDAC6-228ENST00000486227 OR52A4PA6NMU1 304 aa10.52□□□□□ -0.73
HDAC6-228ENST00000486227 CHST10O43529 356 aa10.52□□□□□ -0.73
HDAC6-228ENST00000486227 TLX3O43711 291 aaPredicted RBP10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms