RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 TCP11Q8WWU5 503 aa4.43□□□□□ -1.7
UPF3B-203ENST00000478840 CAPNS2Q96L46 248 aa4.43□□□□□ -1.7
UPF3B-203ENST00000478840 UHRF2Q96PU4 802 aa4.43□□□□□ -1.7
UPF3B-203ENST00000478840 ACCSQ96QU6 501 aa4.43□□□□□ -1.7
UPF3B-203ENST00000478840 TPPP3Q9BW30 176 aa4.43□□□□□ -1.7
UPF3B-203ENST00000478840 CARD6Q9BX69 1037 aa4.43□□□□□ -1.7
UPF3B-203ENST00000478840 MRPL13Q9BYD1 178 aaKnown RBP4.43□□□□□ -1.7
UPF3B-203ENST00000478840 COG4Q9H9E3 785 aa4.43□□□□□ -1.7
UPF3B-203ENST00000478840 C3orf14Q9HBI5 128 aa4.43□□□□□ -1.7
UPF3B-203ENST00000478840 STARD5Q9NSY2 213 aa4.43□□□□□ -1.7
UPF3B-203ENST00000478840 MIOXQ9UGB7 285 aa4.43□□□□□ -1.7
UPF3B-203ENST00000478840 LAMP5Q9UJQ1 280 aa4.43□□□□□ -1.7
UPF3B-203ENST00000478840 PLCL2Q9UPR0 1127 aa4.43□□□□□ -1.7
UPF3B-203ENST00000478840 FOXJ3Q9UPW0 622 aa4.43□□□□□ -1.7
UPF3B-203ENST00000478840 KIF7Q2M1P5 1343 aa4.43□□□□□ -1.7
UPF3B-203ENST00000478840 RNF222A6NCQ9 220 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 TRIM49BA6NDI0 452 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 ANKRD30BLA7E2S9 258 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 NPIPB9F8W1W9 429 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 FAM72CH0Y354 149 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 LGALS8O00214 317 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 B4GAT1O43505 415 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 LMX1BO60663 402 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 THRBP10828 461 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 KRT13P13646 458 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 DPP4P27487 766 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 TMOD1P28289 359 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 MAT2AP31153 395 aaKnown RBP4.42□□□□□ -1.7
UPF3B-203ENST00000478840 FCGR2BP31994 310 aaPredicted RBP4.42□□□□□ -1.7
UPF3B-203ENST00000478840 ADRA1AP35348 466 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 PRPHP41219 470 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 NDST1P52848 882 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 RPL36AP83881 106 aaKnown RBP4.42□□□□□ -1.7
UPF3B-203ENST00000478840 RAPSNQ13702 412 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 CLPPQ16740 277 aaPredicted RBP4.42□□□□□ -1.7
UPF3B-203ENST00000478840 FAM76BQ5HYJ3 339 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 FAM72AQ5TYM5 149 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 FAM72DQ6L9T8 149 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 CWC27Q6UX04 472 aaKnown RBP4.42□□□□□ -1.7
UPF3B-203ENST00000478840 Q6ZRG5 221 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 GOLGA7Q7Z5G4 137 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 GPR142Q7Z601 462 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 PTAR1Q7Z6K3 402 aaPredicted RBP4.42□□□□□ -1.7
UPF3B-203ENST00000478840 VPS36Q86VN1 386 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 LCA5Q86VQ0 697 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 FAM72BQ86X60 149 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 CNBD1Q8NA66 436 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 ZNF397Q8NF99 534 aaPredicted RBP4.42□□□□□ -1.7
UPF3B-203ENST00000478840 OR6F1Q8NGZ6 308 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 LIPHQ8WWY8 451 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 MCHR2Q969V1 340 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 DEFB118Q96PH6 123 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 OVOL2Q9BRP0 275 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 ZNF416Q9BWM5 594 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 YAE1D1Q9NRH1 226 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.42□□□□□ -1.7
UPF3B-203ENST00000478840 AATFQ9NY61 560 aaKnown RBP eCLIP4.42□□□□□ -1.7
UPF3B-203ENST00000478840 KLHDC2Q9Y2U9 406 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 DYNC1LI1Q9Y6G9 523 aaKnown RBP4.42□□□□□ -1.7
UPF3B-203ENST00000478840 RNF215Q9Y6U7 377 aa4.42□□□□□ -1.7
UPF3B-203ENST00000478840 A8MU76 341 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 ZNF195O14628 629 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 TNFSF12O43508 249 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 MTRF1O75570 445 aaKnown RBP4.41□□□□□ -1.7
UPF3B-203ENST00000478840 HPRP00739 348 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 LYNP07948 512 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 HMBSP08397 361 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 PATE4P0C8F1 98 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 CALCBP10092 127 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 GNB3P16520 340 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 TNNI3P19429 210 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 HTR2AP28223 471 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 HNMTP50135 292 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 ITPK1Q13572 414 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 KLF5Q13887 457 aaPredicted RBP4.41□□□□□ -1.7
UPF3B-203ENST00000478840 P2RY14Q15391 338 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 HAGHQ16775 308 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 FFAR4Q5NUL3 377 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 STPG1Q5TH74 334 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 RHBDD2Q6NTF9 364 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 LRRC8BQ6P9F7 803 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 TMEM110Q86TL2 294 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 CATSPERDQ86XM0 798 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 DCUN1D3Q8IWE4 304 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 SLC5A11Q8WWX8 675 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 THRSPQ92748 146 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 SLCO2A1Q92959 643 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 MRPL24Q96A35 216 aaKnown RBP4.41□□□□□ -1.7
UPF3B-203ENST00000478840 PINX1Q96BK5 328 aaKnown RBP4.41□□□□□ -1.7
UPF3B-203ENST00000478840 ZNF486Q96H40 463 aaPredicted RBP4.41□□□□□ -1.7
UPF3B-203ENST00000478840 COG3Q96JB2 828 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 ZNF300Q96RE9 604 aaPredicted RBP4.41□□□□□ -1.7
UPF3B-203ENST00000478840 MYCBPQ99417 103 aaPredicted RBP4.41□□□□□ -1.7
UPF3B-203ENST00000478840 KRT12Q99456 494 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 P2RX2Q9UBL9 471 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 KLK11Q9UBX7 282 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 LNPEPQ9UIQ6 1025 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 TCF19Q9Y242 345 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 ZNF175Q9Y473 711 aa4.41□□□□□ -1.7
UPF3B-203ENST00000478840 SCN5AQ14524 2016 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms