RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 MAP4K3Q8IVH8 894 aa12.92□□□□□ -0.34
USP49-203ENST00000394253 THAP4Q8WY91 577 aa12.92□□□□□ -0.34
USP49-203ENST00000394253 FGGYQ96C11 551 aa12.92□□□□□ -0.34
USP49-203ENST00000394253 ATG4CQ96DT6 458 aa12.92□□□□□ -0.34
USP49-203ENST00000394253 ZNF486Q96H40 463 aaPredicted RBP12.92□□□□□ -0.34
USP49-203ENST00000394253 SNX27Q96L92 541 aa12.92□□□□□ -0.34
USP49-203ENST00000394253 CRAMP1Q96RY5 1269 aa12.92□□□□□ -0.34
USP49-203ENST00000394253 C19orf25Q9UFG5 118 aaPredicted RBP12.92□□□□□ -0.34
USP49-203ENST00000394253 A0A1W2PP18 115 aa12.92□□□□□ -0.34
USP49-203ENST00000394253 K7EPI3 171 aa12.92□□□□□ -0.34
USP49-203ENST00000394253 HPRP00739 348 aa12.92□□□□□ -0.34
USP49-203ENST00000394253 APODP05090 189 aa12.92□□□□□ -0.34
USP49-203ENST00000394253 DPY19L2P1Q6NXN4 242 aa12.92□□□□□ -0.34
USP49-203ENST00000394253 RBMS3Q6XE24 437 aaKnown RBP12.92□□□□□ -0.34
USP49-203ENST00000394253 ERMP1Q7Z2K6 904 aa12.92□□□□□ -0.34
USP49-203ENST00000394253 KCNJ9Q92806 393 aa12.92□□□□□ -0.34
USP49-203ENST00000394253 HSH2DQ96JZ2 352 aa12.92□□□□□ -0.34
USP49-203ENST00000394253 TCAF1Q9Y4C2 921 aa12.92□□□□□ -0.34
USP49-203ENST00000394253 NEO1Q92859 1461 aa12.92□□□□□ -0.34
USP49-203ENST00000394253 A0A096LPI6 279 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 A0A0D9SG52 128 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 CH25HO95992 272 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 GRB2P62993 217 aaKnown RBP12.91□□□□□ -0.34
USP49-203ENST00000394253 FOXO4P98177 505 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 GALK2Q01415 458 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 SCARF1Q14162 830 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 TMEM119Q4V9L6 283 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 NHLRC2Q8NBF2 726 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 TSPEARQ8WU66 669 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 CANT1Q8WVQ1 401 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 CGREF1Q99674 301 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 FAM120CQ9NX05 1096 aaKnown RBP12.91□□□□□ -0.34
USP49-203ENST00000394253 H2BFMP0C1H6 154 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 AGXTP21549 392 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 NFYBP25208 207 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 CHRNB4P30926 498 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 TMEM164Q5U3C3 297 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 SLC7A13Q8TCU3 470 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 G6PC3Q9BUM1 346 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 RFXAPO00287 272 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 ITM2AO43736 263 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 TLR5O60602 858 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 CHRNA1P02708 482 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 HLA-EP13747 358 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 RAB28P51157 221 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 RUNX2Q13950 521 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 ADGRF1Q5T601 910 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 AMZ2Q86W34 360 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 TOP6BLQ8N6T0 577 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 CAMKVQ8NCB2 501 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 SLC25A51Q9H1U9 297 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 F6UZH7 168 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 MLLT3P42568 568 aaPredicted RBP12.91□□□□□ -0.34
USP49-203ENST00000394253 RARRES1P49788 294 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 HBG1P69891 147 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 HBG2P69892 147 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 KLF1Q13351 362 aaPredicted RBP12.91□□□□□ -0.34
USP49-203ENST00000394253 ITPRIPL2Q3MIP1 535 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 CST9LP1Q5W188 147 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 SDSLQ96GA7 329 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 CLEC4EQ9ULY5 219 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 TMX2Q9Y320 296 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 ANKRD26Q9UPS8 1709 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 PFKLP17858 780 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 IMPA1P29218 277 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 TGFB2P61812 414 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 MZT1Q08AG7 82 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 IKBKEQ14164 716 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 PDLIM3Q53GG5 364 aaPredicted RBP12.91□□□□□ -0.34
USP49-203ENST00000394253 C22orf42Q6IC83 251 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 RTL6Q6ICC9 239 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 HINT2Q9BX68 163 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 FAM96BQ9Y3D0 163 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 ERVK-7P63135 1459 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 ADAMTS12P58397 1594 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 BTBD17A6NE02 478 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 ZNF736B4DX44 427 aaPredicted RBP12.91□□□□□ -0.34
USP49-203ENST00000394253 FANCGO15287 622 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 AK4P27144 223 aaPredicted RBP12.91□□□□□ -0.34
USP49-203ENST00000394253 RPL7AP62424 266 aaKnown RBP12.91□□□□□ -0.34
USP49-203ENST00000394253 AWAT2Q6E213 333 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 CEP68Q76N32 757 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 SOBPA7XYQ1 873 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 ARVCFO00192 962 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 SNRNP70P08621 437 aaKnown RBP12.91□□□□□ -0.34
USP49-203ENST00000394253 TOB1P50616 345 aaPredicted RBP12.91□□□□□ -0.34
USP49-203ENST00000394253 KIAA0907Q7Z7F0 614 aaPredicted RBP12.91□□□□□ -0.34
USP49-203ENST00000394253 TMEM200AQ86VY9 491 aa12.91□□□□□ -0.34
USP49-203ENST00000394253 CEP170Q5SW79 1584 aa12.9□□□□□ -0.34
USP49-203ENST00000394253 NOTCH3Q9UM47 2321 aa12.9□□□□□ -0.34
USP49-203ENST00000394253 SERPINE2P07093 398 aa12.9□□□□□ -0.34
USP49-203ENST00000394253 AOC1P19801 751 aa12.9□□□□□ -0.34
USP49-203ENST00000394253 VWA5B2Q8N398 1253 aa12.9□□□□□ -0.34
USP49-203ENST00000394253 OR2A12Q8NGT7 310 aa12.9□□□□□ -0.34
USP49-203ENST00000394253 WASH6PQ9NQA3 447 aa12.9□□□□□ -0.34
USP49-203ENST00000394253 NCOA3Q9Y6Q9 1424 aa12.9□□□□□ -0.34
USP49-203ENST00000394253 KIAA0513O60268 411 aa12.9□□□□□ -0.34
USP49-203ENST00000394253 ECI2O75521 394 aa12.9□□□□□ -0.34
USP49-203ENST00000394253 RNASEH2AO75792 299 aaKnown RBP12.9□□□□□ -0.34
USP49-203ENST00000394253 BCAS2O75934 225 aaPredicted RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms