RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 ANGPTL1O95841 491 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 MT-ND1P03886 318 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 SERPIND1P05546 499 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 FURINP09958 794 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 DDX5P17844 614 aaKnown RBP12.18□□□□□ -0.46
CLK3-201ENST00000345005 TGM1P22735 817 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 PPIBP23284 216 aaKnown RBP12.18□□□□□ -0.46
CLK3-201ENST00000345005 ACVR2AP27037 513 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 CD38P28907 300 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 DCTP40126 519 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 CDKN2CP42773 168 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 ABHD18Q0P651 414 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 PDE7AQ13946 482 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 ZIC1Q15915 447 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 GTDC1Q4AE62 458 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 ZNF542PQ5EBM4 170 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 KIAA1614Q5VZ46 1190 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 ZNF425Q6IV72 752 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 PRR23CQ6ZRP0 262 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 ZNF621Q6ZSS3 439 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 NANOGNBQ7Z5D8 188 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 IQCHQ86VS3 1027 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 CALHM3Q86XJ0 350 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 ABCA7Q8IZY2 2146 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 JPH3Q8WXH2 748 aaPredicted RBP12.18□□□□□ -0.46
CLK3-201ENST00000345005 PPCDCQ96CD2 204 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 YIPF6Q96EC8 236 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 FAM120BQ96EK7 910 aaKnown RBP12.18□□□□□ -0.46
CLK3-201ENST00000345005 DGCR6LQ9BY27 220 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 TWSG1Q9GZX9 223 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 IKZF5Q9H5V7 419 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 USP22Q9UPT9 525 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 SAMD4AQ9UPU9 718 aaKnown RBP12.18□□□□□ -0.46
CLK3-201ENST00000345005 V9GYQ6 96 aa12.18□□□□□ -0.46
CLK3-201ENST00000345005 TTC28Q96AY4 2481 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 FAM221BA6H8Z2 402 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 LRIT2A6NDA9 550 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 CLDN24A6NM45 220 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 CLIC1O00299 241 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 BTN3A3O00478 584 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 YY2O15391 372 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 B3GALT4O96024 378 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 HTR1AP08908 422 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 IL7RP16871 459 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 UGT2B10P36537 528 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 BCL6P41182 706 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 PXNP49023 591 aaPredicted RBP12.17□□□□□ -0.46
CLK3-201ENST00000345005 ARFIP1P53367 373 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 MAPK12P53778 367 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 GP2P55259 537 aaKnown RBP12.17□□□□□ -0.46
CLK3-201ENST00000345005 EMX1Q04741 257 aaPredicted RBP12.17□□□□□ -0.46
CLK3-201ENST00000345005 AQP6Q13520 282 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 GPR18Q14330 331 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 ZNF181Q2M3W8 571 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 SPESP1Q6UW49 350 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 SLC36A4Q6YBV0 504 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 NUDT13Q86X67 352 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 PLD3Q8IV08 490 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 FAM20CQ8IXL6 584 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 FBXL6Q8N531 539 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 NATD1Q8N6N6 113 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 MFSD9Q8NBP5 474 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 FAR1Q8WVX9 515 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 PYURFQ96I23 114 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 SPACA7Q96KW9 195 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 CTRCQ99895 268 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 SORBS1Q9BX66 1292 aaKnown RBP12.17□□□□□ -0.46
CLK3-201ENST00000345005 ZNF717Q9BY31 904 aaPredicted RBP12.17□□□□□ -0.46
CLK3-201ENST00000345005 CCDC90BQ9GZT6 254 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 MMP27Q9H306 513 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 SMURF2Q9HAU4 748 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 VPS4AQ9UN37 437 aa12.17□□□□□ -0.46
CLK3-201ENST00000345005 PTGES3LE9PB15 166 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 HAT1O14929 419 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 ZW10O43264 779 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 JRKO75564 520 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 CREG1O75629 220 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 IL3P08700 152 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 SOX11P35716 441 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 CXCL12P48061 93 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 RXRGP48443 463 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 PCYT1AP49585 367 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 GZMMP51124 257 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 TRA2BP62995 288 aaKnown RBP12.16□□□□□ -0.46
CLK3-201ENST00000345005 RACK1P63244 317 aaKnown RBP12.16□□□□□ -0.46
CLK3-201ENST00000345005 UBE2IP63279 158 aaKnown RBP12.16□□□□□ -0.46
CLK3-201ENST00000345005 MC1RQ01726 317 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 RPL6Q02878 288 aaKnown RBP12.16□□□□□ -0.46
CLK3-201ENST00000345005 OR4C11Q6IEV9 310 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 TSPYL5Q86VY4 417 aaPredicted RBP12.16□□□□□ -0.46
CLK3-201ENST00000345005 ARMC8Q8IUR7 673 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 CLECL1Q8IZS7 167 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 DEFB119Q8N690 84 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 SRFBP1Q8NEF9 429 aaKnown RBP12.16□□□□□ -0.46
CLK3-201ENST00000345005 RHOXF1Q8NHV9 184 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 FBXO30Q8TB52 745 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 TM4SF18Q96CE8 201 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 TBCDQ9BTW9 1192 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 ARMC7Q9H6L4 198 aa12.16□□□□□ -0.46
CLK3-201ENST00000345005 DDX31Q9H8H2 851 aaKnown RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms