RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CCR8P51685 355 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 TBC1D25Q3MII6 688 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 PRAMEF14Q5SWL7 426 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 PRAMEF13Q5VWM6 474 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 CEACAM19Q7Z692 300 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 RNF130Q86XS8 419 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 BEST3Q8N1M1 668 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 TMEM130Q8N3G9 435 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 TTLQ8NG68 377 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 TCEAL3Q969E4 200 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 RTP4Q96DX8 246 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 POTEKPQ9BYX7 375 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 ARHGAP39Q9C0H5 1083 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 AGPAT4Q9NRZ5 378 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 NLGN3Q9NZ94 848 aa11.04□□□□□ -0.64
VPS39-201ENST00000318006 ADAMTS7Q9UKP4 1686 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 LRRTM2O43300 516 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 MITFO75030 526 aaPredicted RBP11.03□□□□□ -0.64
VPS39-201ENST00000318006 POP7O75817 140 aaKnown RBP11.03□□□□□ -0.64
VPS39-201ENST00000318006 GTF2F2P13984 249 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 ZNF20P17024 532 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 TMEM69Q5SWH9 247 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 FAM122CQ6P4D5 195 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 LRRTM4Q86VH4 590 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 SIMC1Q8NDZ2 872 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 MFSD8Q8NHS3 518 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 FRS2Q8WU20 508 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 PTERQ96BW5 349 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 ADAP2Q9NPF8 381 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 ASB4Q9Y574 426 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 HTR1AP08908 422 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 RAB3BP20337 219 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 AKT2P31751 481 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 CREB5Q02930 508 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 GALNT1Q10472 559 aaPredicted RBP11.03□□□□□ -0.64
VPS39-201ENST00000318006 C17orf99Q6UX52 265 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 GRASPQ7Z6J2 395 aaPredicted RBP11.03□□□□□ -0.64
VPS39-201ENST00000318006 KDM1BQ8NB78 822 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 OR5H6Q8NGV6 325 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 GSKIPQ9P0R6 139 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 BORCS7-ASMTA0A0B4J1R7 106 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 ZNF840PA6NDX5 716 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 FCER2P06734 321 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 DCTP40126 519 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 KEAP1Q14145 624 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 THOC6Q86W42 341 aaKnown RBP11.03□□□□□ -0.64
VPS39-201ENST00000318006 NPWQ8N729 165 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 OR8S1Q8NH09 359 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 RBM18Q96H35 190 aaKnown RBP11.03□□□□□ -0.64
VPS39-201ENST00000318006 SECISBP2Q96T21 854 aaKnown RBP11.03□□□□□ -0.64
VPS39-201ENST00000318006 ZBTB20Q9HC78 741 aaPredicted RBP11.03□□□□□ -0.64
VPS39-201ENST00000318006 CDH7Q9ULB5 785 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 NDRG2Q9UN36 371 aaKnown RBP11.03□□□□□ -0.64
VPS39-201ENST00000318006 C14orf166Q9Y224 244 aaKnown RBP11.03□□□□□ -0.64
VPS39-201ENST00000318006 DNAJC15Q9Y5T4 150 aa11.03□□□□□ -0.64
VPS39-201ENST00000318006 G3V2L1 256 aa11.02□□□□□ -0.64
VPS39-201ENST00000318006 GDI1P31150 447 aa11.02□□□□□ -0.64
VPS39-201ENST00000318006 ACTR1BP42025 376 aa11.02□□□□□ -0.64
VPS39-201ENST00000318006 ACTR1AP61163 376 aa11.02□□□□□ -0.64
VPS39-201ENST00000318006 MORN1Q5T089 497 aa11.02□□□□□ -0.64
VPS39-201ENST00000318006 TMCO2Q7Z6W1 182 aaPredicted RBP11.02□□□□□ -0.64
VPS39-201ENST00000318006 ZNF101Q8IZC7 436 aa11.02□□□□□ -0.64
VPS39-201ENST00000318006 OR7G2Q8NG99 324 aa11.02□□□□□ -0.64
VPS39-201ENST00000318006 TBC1D15Q8TC07 691 aa11.02□□□□□ -0.64
VPS39-201ENST00000318006 RGMAQ96B86 450 aa11.02□□□□□ -0.64
VPS39-201ENST00000318006 FEVQ99581 238 aa11.02□□□□□ -0.64
VPS39-201ENST00000318006 SMG9Q9H0W8 520 aaKnown RBP11.02□□□□□ -0.64
VPS39-201ENST00000318006 SYT4Q9H2B2 425 aa11.02□□□□□ -0.64
VPS39-201ENST00000318006 BIN3Q9NQY0 253 aa11.02□□□□□ -0.64
VPS39-201ENST00000318006 PCDHGB2Q9Y5G2 931 aa11.02□□□□□ -0.64
VPS39-201ENST00000318006 PTGDR2Q9Y5Y4 395 aa11.02□□□□□ -0.64
VPS39-201ENST00000318006 TCRBV3S1A0A5B6 114 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 ZNF878C9JN71 531 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 CYBAP13498 195 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 GK3PQ14409 553 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 EIF4HQ15056 248 aaKnown RBP11.02□□□□□ -0.65
VPS39-201ENST00000318006 ELP2Q6IA86 826 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 ADGRG5Q8IZF4 528 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 PNLDC1Q8NA58 520 aaKnown RBP11.02□□□□□ -0.65
VPS39-201ENST00000318006 PMM1Q92871 262 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 TAPBPLQ9BX59 468 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 POLMQ9NP87 494 aaPredicted RBP11.02□□□□□ -0.65
VPS39-201ENST00000318006 OR2S2Q9NQN1 319 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 KCNN3Q9UGI6 736 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 TEX13DA0A0J9YY54 714 aaPredicted RBP11.02□□□□□ -0.65
VPS39-201ENST00000318006 TEX51A0A1B0GUA7 166 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 AGXTP21549 392 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 AHCYP23526 432 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 CASP3P42574 277 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 HK3P52790 923 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 LRRC32Q14392 662 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 GPR68Q15743 365 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 NOXRED1Q6NXP6 359 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 AGTRAPQ6RW13 159 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 ARSKQ6UWY0 536 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 MRPL10Q7Z7H8 261 aaKnown RBP11.02□□□□□ -0.65
VPS39-201ENST00000318006 TICAM1Q8IUC6 712 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 ZDHHC14Q8IZN3 488 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 HS3ST5Q8IZT8 346 aa11.02□□□□□ -0.65
VPS39-201ENST00000318006 KRTCAP2Q8N6L1 136 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms