RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 LZTS3O60299 673 aaPredicted RBP12.13□□□□□ -0.47
LINC00540-203ENST00000631321 B4GALT2O60909 372 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 ENTPD6O75354 484 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 MED26O95402 600 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 HSMCR30P0CW71 290 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 ACRP10323 421 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 ELAVL4P26378 380 aaKnown RBP12.13□□□□□ -0.47
LINC00540-203ENST00000631321 GSTM5P46439 218 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 KCNJ5P48544 419 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 MANFP55145 182 aaKnown RBP12.13□□□□□ -0.47
LINC00540-203ENST00000631321 RPS26P62854 115 aaKnown RBP12.13□□□□□ -0.47
LINC00540-203ENST00000631321 DOC2BQ14184 412 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 HEPACAMQ14CZ8 416 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 SEC23BQ15437 767 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 TCEAL5Q5H9L2 206 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 TNFAIP8L2Q6P589 184 aaPredicted RBP12.13□□□□□ -0.47
LINC00540-203ENST00000631321 ERN2Q76MJ5 926 aaKnown RBP12.13□□□□□ -0.47
LINC00540-203ENST00000631321 ETFBKMTQ8IXQ9 262 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 ANKRD53Q8N9V6 530 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 POC5Q8NA72 575 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 FAM83FQ8NEG4 500 aaPredicted RBP12.13□□□□□ -0.47
LINC00540-203ENST00000631321 OR8D1Q8WZ84 308 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 COX14Q96I36 57 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 OPALINQ96PE5 141 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 AIF1LQ9BQI0 150 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 ITGB1BP2Q9UKP3 347 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 PLAGL1Q9UM63 463 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 PCYT1BQ9Y5K3 369 aaPredicted RBP12.13□□□□□ -0.47
LINC00540-203ENST00000631321 NOTCH4Q99466 2003 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 ALPK3Q96L96 1907 aa12.13□□□□□ -0.47
LINC00540-203ENST00000631321 EDDM13A0A1B0GTR0 161 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 PNMA8CA0A1B0GUJ8 204 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 ANKDD1BA6NHY2 528 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 FAM227AF5H4B4 570 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 SLITRK5O94991 958 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 SCG5P05408 212 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 HNRNPA1P09651 372 aaKnown RBP eCLIP12.12□□□□□ -0.47
LINC00540-203ENST00000631321 CXCR2P25025 360 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 CSTF2P33240 577 aaKnown RBP eCLIP12.12□□□□□ -0.47
LINC00540-203ENST00000631321 SOX6P35712 828 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 HSD17B2P37059 387 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 REEP5Q00765 189 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 SELENBP1Q13228 472 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 KRR1Q13601 381 aaKnown RBP12.12□□□□□ -0.47
LINC00540-203ENST00000631321 C6orf120Q7Z4R8 191 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 IL17RCQ8NAC3 791 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 WDR36Q8NI36 951 aaKnown RBP12.12□□□□□ -0.47
LINC00540-203ENST00000631321 CHAC2Q8WUX2 184 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 SMPDL3AQ92484 453 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 ZNF354BQ96LW1 612 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 QRFPRQ96P65 431 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 F2RL3Q96RI0 385 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 PITHD1Q9GZP4 211 aaPredicted RBP12.12□□□□□ -0.47
LINC00540-203ENST00000631321 LHX9Q9NQ69 397 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 DYRK4Q9NR20 520 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 SACM1LQ9NTJ5 587 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 PCDHGB6Q9Y5F9 930 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 TRIM43BA6NCK2 446 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 PRRT4C9JH25 899 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 HMGN4O00479 90 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 KCNK2O95069 426 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 ADH1CP00326 375 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 H1F0P07305 194 aaKnown RBP12.12□□□□□ -0.47
LINC00540-203ENST00000631321 CEBPBP17676 345 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 POU1F1P28069 291 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 OPRD1P41143 372 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 SMIM11AP58511 58 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 MESP2Q0VG99 397 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 MLC1Q15049 377 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 NCF4Q15080 339 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 MED22Q15528 200 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 DCST1Q5T197 706 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 ADAMTSL4Q6UY14 1074 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 GDPGP1Q6ZNW5 385 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 RASSF5Q8WWW0 418 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 TFGQ92734 400 aaPredicted RBP12.12□□□□□ -0.47
LINC00540-203ENST00000631321 TRIM43Q96BQ3 446 aaPredicted RBP12.12□□□□□ -0.47
LINC00540-203ENST00000631321 ABHD8Q96I13 439 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 TEFMQ96QE5 360 aaKnown RBP12.12□□□□□ -0.47
LINC00540-203ENST00000631321 PCBD2Q9H0N5 130 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 ABCG4Q9H172 646 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 SIAEQ9HAT2 523 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 HHATLQ9HCP6 504 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 ACSS1Q9NUB1 689 aaPredicted RBP12.12□□□□□ -0.47
LINC00540-203ENST00000631321 ADAM29Q9UKF5 820 aa12.12□□□□□ -0.47
LINC00540-203ENST00000631321 LOC110117498-PIK3R3F6TDL0 507 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 RTCAO00442 366 aaKnown RBP12.11□□□□□ -0.47
LINC00540-203ENST00000631321 GPX5O75715 221 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 ALDH6A1Q02252 535 aaKnown RBP12.11□□□□□ -0.47
LINC00540-203ENST00000631321 ELAVL3Q14576 367 aaKnown RBP12.11□□□□□ -0.47
LINC00540-203ENST00000631321 LEXMQ3ZCV2 418 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 FAM180BQ6P0A1 224 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 PGBD2Q6P3X8 592 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 AMZ2Q86W34 360 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 C2orf73Q8N5S3 287 aaPredicted RBP12.11□□□□□ -0.47
LINC00540-203ENST00000631321 CELF5Q8N6W0 485 aaKnown RBP12.11□□□□□ -0.47
LINC00540-203ENST00000631321 OR5K2Q8NHB8 316 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 KLHL6Q8WZ60 621 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 PIK3R3Q92569 461 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 HTRA1Q92743 480 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms