RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 NUFIP1Q9UHK0 495 aaKnown RBP14.55□□□□□ -0.08
UPF1-204ENST00000596842 BTNL2Q9UIR0 455 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 SLITRK5O94991 958 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 IFNA14P01570 189 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 MPC1LP0DKB6 136 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 PRKCDQ05655 676 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 IRF3Q14653 427 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 DCST1Q5T197 706 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 MSANTD1Q6ZTZ1 278 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 LACC1Q8IV20 430 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 KIAA1958Q8N8K9 716 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 OR52N2Q8NGI0 321 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 TRMT61AQ96FX7 289 aaKnown RBP14.55□□□□□ -0.08
UPF1-204ENST00000596842 PRR14Q9BWN1 585 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 KCNK12Q9HB15 430 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 ASF1AQ9Y294 204 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 SPIN1Q9Y657 262 aaPredicted RBP14.55□□□□□ -0.08
UPF1-204ENST00000596842 MYO9BQ13459 2157 aa14.55□□□□□ -0.08
UPF1-204ENST00000596842 PLD2O14939 933 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 TPPPO94811 219 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 ARHGEF15O94989 841 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 TSPAN19P0C672 248 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 GPC1P35052 558 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 XKP51811 444 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 CDC20Q12834 499 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 CLEC12AQ5QGZ9 265 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 METTL2BQ6P1Q9 378 aaKnown RBP14.54□□□□□ -0.08
UPF1-204ENST00000596842 AMIGO1Q86WK6 493 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 OR8H1Q8NGG4 311 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 FIBINQ8TAL6 211 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 ASB12Q8WXK4 309 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 COQ8BQ96D53 544 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 MSANTD3Q96H12 275 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 RETREG1Q9H6L5 497 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 SEC14L3Q9UDX4 400 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 SNX11Q9Y5W9 270 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 SLC35F4A4IF30 521 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 SLC28A2O43868 658 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 CH25HO95992 272 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 CYP17A1P05093 508 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 ALDH6A1Q02252 535 aaKnown RBP14.54□□□□□ -0.08
UPF1-204ENST00000596842 SP3Q02447 781 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 MLLT1Q03111 559 aaPredicted RBP14.54□□□□□ -0.08
UPF1-204ENST00000596842 IL17RDQ8NFM7 739 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 PHF21AQ96BD5 680 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 MAP6Q96JE9 813 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 FYTTD1Q96QD9 318 aaKnown RBP14.54□□□□□ -0.08
UPF1-204ENST00000596842 SIGLEC11Q96RL6 698 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 TSSK6Q9BXA6 273 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 ATP6V1HQ9UI12 483 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 SSR3Q9UNL2 185 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 ENPP4Q9Y6X5 453 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 PIPSLA2A3N6 862 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 M0R3H8 397 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 NNMTP40261 264 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 LIM2P55344 173 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 TLE2Q04725 743 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 KRR1Q13601 381 aaKnown RBP14.54□□□□□ -0.08
UPF1-204ENST00000596842 PRSS53Q2L4Q9 553 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 MPEG1Q2M385 716 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 OR2G6Q5TZ20 316 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 RAET1GQ6H3X3 334 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 ZNF544Q6NX49 715 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 ZNF367Q7RTV3 350 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 SYT14Q8NB59 555 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 FAM46DQ8NEK8 389 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 OR5D16Q8NGK9 328 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 CHTF18Q8WVB6 975 aa14.54□□□□□ -0.08
UPF1-204ENST00000596842 EFHD2Q96C19 240 aaPredicted RBP14.54□□□□□ -0.08
UPF1-204ENST00000596842 GFM1Q96RP9 751 aaKnown RBP14.54□□□□□ -0.08
UPF1-204ENST00000596842 FEZF1A0PJY2 475 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 SCAMP1O15126 338 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 GREM1O60565 184 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 IGHA2P01877 340 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 GSTM5P46439 218 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 SP140Q13342 867 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 C1DQ13901 141 aaKnown RBP14.53□□□□□ -0.08
UPF1-204ENST00000596842 NFE2L1Q14494 772 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 SEC23BQ15437 767 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 BRAT1Q6PJG6 821 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 LINC00299Q6ZSB3 139 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 OXR1Q8N573 874 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 CRELD1Q96HD1 420 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 TMEM19Q96HH6 336 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 CXorf36Q9H7Y0 433 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 IL20RAQ9UHF4 553 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 TRAV19A0A0A6YYK7 116 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 FABP12A6NFH5 140 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 FAM25AB3EWG3 89 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 FAM25CB3EWG5 89 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 FAM25GB3EWG6 89 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 RNASET2O00584 256 aaKnown RBP14.53□□□□□ -0.08
UPF1-204ENST00000596842 GRM6O15303 877 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 ABLIM3O94929 683 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 METAP1P53582 386 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 ATAT1Q5SQI0 421 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 GLCCI1Q86VQ1 547 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 HORMAD2Q8N7B1 307 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 OR2A12Q8NGT7 310 aa14.53□□□□□ -0.08
UPF1-204ENST00000596842 KLHL6Q8WZ60 621 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms